Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2943 ATGGAACCTTGGAGTTATGTTCCTGATGAGAAAGGATATTTGTTTTCTGATGAAATGGATTTTTCACTTGATGCTTTTGTGAGAAGTAGAAAGGCAATGACTGAATGGGACAACAAAGCCTCTTGTAACTTCGAGAGAGGCGGTTTCAATTCGGAAAGAGAGGTAGTTAGGAGCATGGAATTCGTAGACTTGGGGTTCCCGGATTTGTTCCGAAAGCCCTTCGAGCTAGATAGTAATTTGAGTAGAAGAGGGAATACCTCTGCTCAAGTTATTGACTTGGATTCTTCTCTTGGGGAAGAAGAATCCGAGTCAAAGCATTTGAGTTCTTTAGGTGAATTGAAGGCTCAAGATACGTCATTGATCGATCTGAAGCTAGGGAGAATAGCAGATTGTCAAGCTGCAAGCAATGATAAAGTTGGAAATGAAGGGTTCACTTTAATACCAATGCAACAACCAAGTCCGACCACACTGGCAAAGAGAGCTCGCACTTCATGCTCGCCGAATCAGACTCCTGTATGTCAAGTTTATGGTTGTAACATGGATCTTAGTTCCTCAAAAGATTACCACAAAAGGCACAAGGTTTGTGATGTTCATTCCAAGACAGCTAAAGTTATTGTTAACGGTATTGAACAGAGATTTTGTCAGCAATGCAGCAGGTTCCAATTGTTAGCTGAGTTTGATGATGGTAAGCGCAGCTGTCGCAGGCGTCTAGCAGGACACAATGAACGGCGAAGGAAACCTCAGTTTGATTATATGACTAGTAAACAGCATAAGATACTTCATTCGCATCAAGGTGCAAGATATATGGAGTCTTCCTTACAAAAGAGGCCACAATTTTCATTTCCAGACATATTTCGAAGTGGCAAGTATGATAAAATCTCTCAGAATGGCAATGTCAAATTAGAAGAGGAGTTTATTTTCAGCCCTCAATTCGCAGCACCGGTCGCGCATGGTCAGGAGTTATCTAGCCGTGCTCTCTCTCTTCTGTCAGCTCAGTCACAGATTCCATCGCGCCCCTCAGAAGAAAATCCTTTAGCCAGCTCCTTTAGTTTTCACAGCATCTCTGAAATGCCTTTGGATATAAGCAATGAGGGTAAATACGTTGTGGACGAGTCCTTTCCGTGCGAGATGAACCATAAAGAATTTATCAAGAGTGAATCGGCAATGCTTTCTGATGCCGGCCACCCTGATCATCGAGCCAGTAGTGATGACATTTGTTCGCCCTTGGAACATGGATCCACTGTGGACTTATTCCAGTTATCATCCAATCTTGAAAGGGTAGAGCAGAAGAGAAATTCTGTTTCGGTAAAGTGGGAAAATGAGAACTCTTGTTTCCCAGCATTGTAA 1347 0.4261 MEPWSYVPDEKGYLFSDEMDFSLDAFVRSRKAMTEWDNKASCNFERGGFNSEREVVRSMEFVDLGFPDLFRKPFELDSNLSRRGNTSAQVIDLDSSLGEEESESKHLSSLGELKAQDTSLIDLKLGRIADCQAASNDKVGNEGFTLIPMQQPSPTTLAKRARTSCSPNQTPVCQVYGCNMDLSSSKDYHKRHKVCDVHSKTAKVIVNGIEQRFCQQCSRFQLLAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILHSHQGARYMESSLQKRPQFSFPDIFRSGKYDKISQNGNVKLEEEFIFSPQFAAPVAHGQELSSRALSLLSAQSQIPSRPSEENPLASSFSFHSISEMPLDISNEGKYVVDESFPCEMNHKEFIKSESAMLSDAGHPDHRASSDDICSPLEHGSTVDLFQLSSNLERVEQKRNSVSVKWENENSCFPAL* 449
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2943 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 56 444 IPR044817 GO:0003677
Amo05g2943 448 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 56 444 - -
Amo05g2943 448 ProSiteProfiles Zinc finger SBP-type profile. 170 247 IPR004333 GO:0003677
Amo05g2943 448 Gene3D - 164 234 IPR036893 GO:0003677|GO:0005634
Amo05g2943 448 Pfam SBP domain 173 246 IPR004333 GO:0003677
Amo05g2943 448 SUPERFAMILY SBT domain 171 252 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2943 Amo-Chr5 83373159 83376508 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2943 100 447 SBP-box Gene Family AT1G69170 39.062 1.28e-59 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Amo05g2943 SBP 4.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2943 - - adu:107489502 877.856