Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2925 ATGGCATACCAAGCGATTCAGGGCCCAAGCTCGGGATCGAGTTCAAGTTCGGGGTTTCAGTTATTGAACTCTCCTTTCGGTGACACCACATACACCAAGGTTTTCGTCGGAGGGCTGGCATGGGAGACTCAAAGTGAAACCATGCGCCGCCACTTCGAGCAGTTTGGTGAAATTCTTGAGGCCGTAGTAATCACTGACAAGAACACCGGGAGATCCAAAGGATATGGTTTTGTGACTTTCCGGGATCCCGAGGCTGCTAGGAGAGCGTGTGCTGATCCAACTCCAATCATTGATGGTAGAAGAGCTAATTGTAACTTGGCTTCACTCGGTCGACCACGCCCTCCGCTGCCTTATGGACGGATAAGACCAGCCTCCCCATATGTTGGAGGTTTGCAACCAGCGAGAGGAGCCTTTTTGGGAAGTTTCGGCTACCAGCAACCAGTTTCATACGGCTATCAACAGGGGTTGGTTTATCCACCTTATGGGTATACAACGTATGGACCTGAATACGTCTACCCACAGAGTATGTACAATCCATATATGGGTCAGCACTACCTTCAGATATATGGAGTGCCTGGTGCAGTAAACACAACCATTTATCCCTATGGACAAGTGGGTCAGGCTATGCCTAGTGGACATGGGTATACAGCAATGCAAGGCTATACAATACCAGGCCATCAGATCGTGCCATATGGTGGATCTAATGTTAATGCCATGTCAACTTCACCTATGCCTGCCATTCAAACACCATATCCTAGCGGAATTGCTGCACCAGTTCCAGGCCAACCGCAATTTATTGTTCCTGCTCCTTCTCCACAGTTTATGCAAGGCAGTGGTCCTGACCAAACCGCTGGGTGA 858 0.4942 MAYQAIQGPSSGSSSSSGFQLLNSPFGDTTYTKVFVGGLAWETQSETMRRHFEQFGEILEAVVITDKNTGRSKGYGFVTFRDPEAARRACADPTPIIDGRRANCNLASLGRPRPPLPYGRIRPASPYVGGLQPARGAFLGSFGYQQPVSYGYQQGLVYPPYGYTTYGPEYVYPQSMYNPYMGQHYLQIYGVPGAVNTTIYPYGQVGQAMPSGHGYTAMQGYTIPGHQIVPYGGSNVNAMSTSPMPAIQTPYPSGIAAPVPGQPQFIVPAPSPQFMQGSGPDQTAG* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2925 285 PANTHER RNA-BINDING PROTEIN 38-LIKE ISOFORM X1 1 281 - -
Amo05g2925 285 SUPERFAMILY RNA-binding domain, RBD 31 119 IPR035979 GO:0003676
Amo05g2925 285 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 32 109 IPR000504 GO:0003723
Amo05g2925 285 CDD RRM_RBM24_RBM38_like 32 107 - -
Amo05g2925 285 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 34 90 IPR000504 GO:0003723
Amo05g2925 285 SMART rrm1_1 33 105 IPR000504 GO:0003723
Amo05g2925 285 PANTHER BOULE-RELATED 1 281 IPR037366 GO:0003729
Amo05g2925 285 Gene3D - 4 116 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2925 Amo-Chr5 82015809 82019617 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2925 21 164 C2H2 Transcription Factor Family AT2G19380 33.548 1.90e-17 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2925 - - aprc:113864528 524.242