Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2922 ATGGAGGTGTCTTTAAGTGATGGGAATGGGGAGCTCCTGGGTACCGACAACGAGGCTGATGTGGAATCRAACCCGGAGGACATGGRTGGTCAGGATGTTGCAGACGAGTTTTTGGGTGAATATGAAGATGTCGCGACATTAGATGTGGATGACATAAAGCGGATGCGGTGGGATAGTGTTGAYRCTGCTTATGAGTTTTACAGGAGGCTGGGAATGTGTCATGGATTCGGCGTCAGGAAGGGTGATTCAGGCAAAGACTGTAGAGGAAATCTGATTAGATATAGGTTTTTTTGTAACAAGGAAGGGTTGAGGGATGGGAGACACAACGACCGAGTTGATAGACGGAGGGCACACAAACCTGAGACACGAACCAATTGTGAGGCTAAGCTCTCCATATACTTTGATAAGATTGAGCGTTGTTGGAAGGTGCGAAAAGTTGCGACAGAACATAATCACGACTTGACGCCCGCATCAATGGTCCATCTGATAGCCAACCATCGTGAAATGACCGATGCAGCAAAGGCTCAGATTGATGGGTTGCATGCTAGTGGCATTGCGACATCGAAGATTGTTGGATACATGGCCGGAATGGCTGGTGGGTACTCGTTGTTGGGTTTCTTGAAGAAGGATGTGTACAACTACGCCGACAGAACCCAGCGCGCTAACATATCAGATGGCGATGCGAATGCGGCTGTTGTTTATCTGGAGGGAAAGGCTGGTTTGGATCCCATGTCGGTTGCTAGATATAGTGTAACAAAAGATGCAAGGCTGGCAAATTTAATTTGGGCCGATGGAGCTAGCAGAGTTGATTATCAACATTTTGGAGATGTGCTGCCCTTCGACTCGACATATAAGAAAAACAAGTACAAAAAACCTCTTGTGATTTTTTCAGGGTCAAACAACCACAAGCAGACCACGATTTTTGGGTTTGGTCTATTATTTGACGAGAGTGTCAGTTCTTACAAGTGGATGTTAGAAAATCTGCTTGAGGTGATGTGCATGAAGAAACCGTCTGTGGTTGTGACTGACGGGGATAAGGCGATCATAAAGGCAGTYYGATMTGTTCTTCCTGATTCGACACACCGACTGTGTGCCTGGCATATTGAGAAGAATGTTACCTCAAACGTGAAAGATGCAGTTTTACGTAGCTCTTTTAGAAGGTGGTTGTATGTTGACATGGAAATAGAGGAGTTCGAGATGGAATGGGAGCGTGCGGTTGCTGAGTATGACCTATATGACAAGGAGTGGGCCACCCAAATGTATGAGAGGAGGATGATGTGGGCAAATGCATATCTGCAAGGCAAGTTTTGCGCCGGTTTCCGGACAACGTCTCGATGTGAAGGGGTTAATGCCTTTGTAAAAAAGTTCTCGAAGACAACGCACACTATACTTGAGTTGGTTCAGAATTTGGAATTGGTGGTCCGGGAGTACCGAAACAAAGAGTTACTACTCCACTTCAACTCRATGAATTCCGTTCCAGTGATGACCACTGGCTTGACCTCGATTGAGCAACATGCCGCCTCGGTGTATACGAGAGAAGTCTTTACTGATGTCAAGAAACAGATAGTCCAAGCTGCAGCGTTGATTCTTATATCCAAGAAAAGGTGCCTTAACACAATGGTCTATATGGTTGAGGAGTACGAGCAGCCAGCTACGAGARTCAAGGTTGCCTATGGCAGGTCCACGGGCAAAATTGACTGCCAATGTAACTTTTGGAGGAAGAATGGGTACCCCTGTAGACATATGTTCTTTGTGATGAAGTCCGAACATGTAACTACCATCCCGGATGCACTTGTGTTGCAGAGATGGYGATTAAACGCGAAGGCCATAGAGAGTTACGTCGAGAGGTGGGGTGGCACCAGTGAGGCCGGGTTTTTGCTTCGACACGGTGCCCTCCACACTGCATCGCATAGGCTCTTCCTAATAGGCGCCCAGAAATTGTCWTTATTTAGGAAGGCCCTGAATGGCGTACTTACGCTTTGCCGAGAGCTCGAACTAGAGTACARAGCGTTCGAGGACGGAGGGGGGGAAAGGCCGATATCGGCGGTCCAGACCAAAGAGGTCAACTGCGTCGTTAGGGACCCAGCTGTTGCAAAATCGAAGGGGGCACAAAAGTTCACCAAAAAAGGACACCTTCGGAAGAAGCGTCTTTGCACAATATGGAAGCGGCCAGGGCACACGAAGAGACACTGCATGAAGAATATAGAAYAGCAAAGAGATTGCAGCGAGGAAGAATTGGTAGAAGACAATGGCATCCACCAGGGTCTGAATTCAGGTTCAAAGCGACGAAAATTGGTACGCAATGTTGGAAAAAGCATGTCGCATCCCGTAGAGTCTTGCGCCGGTGATGAGGATTCCCCGGCTCGGATTATAGGAAATGAACCGCAGGTGTTGCATCAGATGCAGCAGTTCCTTCGTCAAGCAAGGCAGAATCACGGGCTAACAACTGGGAGTGGTAAGTGA 2463 0.4742 MEVSLSDGNGELLGTDNEADVESNPEDMXGQDVADEFLGEYEDVATLDVDDIKRMRWDSVDXAYEFYRRLGMCHGFGVRKGDSGKDCRGNLIRYRFFCNKEGLRDGRHNDRVDRRRAHKPETRTNCEAKLSIYFDKIERCWKVRKVATEHNHDLTPASMVHLIANHREMTDAAKAQIDGLHASGIATSKIVGYMAGMAGGYSLLGFLKKDVYNYADRTQRANISDGDANAAVVYLEGKAGLDPMSVARYSVTKDARLANLIWADGASRVDYQHFGDVLPFDSTYKKNKYKKPLVIFSGSNNHKQTTIFGFGLLFDESVSSYKWMLENLLEVMCMKKPSVVVTDGDKAIIKAVXXVLPDSTHRLCAWHIEKNVTSNVKDAVLRSSFRRWLYVDMEIEEFEMEWERAVAEYDLYDKEWATQMYERRMMWANAYLQGKFCAGFRTTSRCEGVNAFVKKFSKTTHTILELVQNLELVVREYRNKELLLHFNSMNSVPVMTTGLTSIEQHAASVYTREVFTDVKKQIVQAAALILISKKRCLNTMVYMVEEYEQPATRXKVAYGRSTGKIDCQCNFWRKNGYPCRHMFFVMKSEHVTTIPDALVLQRWXLNAKAIESYVERWGGTSEAGFLLRHGALHTASHRLFLIGAQKLSLFRKALNGVLTLCRELELEYXAFEDGGGERPISAVQTKEVNCVVRDPAVAKSKGAQKFTKKGHLRKKRLCTIWKRPGHTKRHCMKNIEXQRDCSEEELVEDNGIHQGLNSGSKRRKLVRNVGKSMSHPVESCAGDEDSPARIIGNEPQVLHQMQQFLRQARQNHGLTTGSGK* 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2922 820 Pfam MULE transposase domain 277 371 IPR018289 -
Amo05g2922 820 SMART 26again6 565 592 IPR006564 GO:0008270
Amo05g2922 820 MobiDBLite consensus disorder prediction 1 30 - -
Amo05g2922 820 ProSiteProfiles Zinc finger SWIM-type profile. 552 590 IPR007527 GO:0008270
Amo05g2922 820 PANTHER OS02G0262500 PROTEIN 29 709 - -
Amo05g2922 820 Pfam SWIM zinc finger 563 582 IPR007527 GO:0008270
Amo05g2922 820 Pfam FAR1 DNA-binding domain 65 155 IPR004330 -
Amo05g2922 820 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 29 709 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2922 Amo-Chr5 81993015 81997919 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g2922 MULE 2.9e-26 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2922 - - ahf:112730358 1015.76