Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2911 ATGAAGGGATATGAGCCTCGTTCAAGTTCTTCTTGTGCAGCCTGCAAATTACTCAAGAGAAGATGCATCCCCAACTGCATCTTCGCGCCGTATTTTCGCTCCGATGAGTGCAAGAAATTCGCGAAAGTTCACAAGGTGTTCGGAGCAAGCAATGTGAGCAAGATCCTCATTGAGGTCCCTGAAGAGCAAAGAGAGGACACGGTGAATTCTCTCGCTTATGAGGCCGAAGCCAGGCTCCGCGACCCAGTTTATGGATGCATTGGCGCCATAGCGCTCCTTCAGAGGAAGATGGTAGAGTTACAACACGATCTGGCGATAGCTAAAGATCGCCTGGCTCGTGTTGTAGCTTCTACTACATCTGCCTCTGATTCTGCTTTGGTCGCTACTACTACTTTTAGTAGTAGCGATGAAATTATGCATGGTTCTTCTTATTCCCATGTTAGCTTGCCCCCTTTTCCTTGCAGTGATTTCAGTGATAGCTTCTGCCATAGCTCTTCTTCTTCATCTCAATTCTTGAGCCGACATGATCAAGCGGTTGATGATTTCACTCAAATCCCATACATATTTTAA 570 0.4632 MKGYEPRSSSSCAACKLLKRRCIPNCIFAPYFRSDECKKFAKVHKVFGASNVSKILIEVPEEQREDTVNSLAYEAEARLRDPVYGCIGAIALLQRKMVELQHDLAIAKDRLARVVASTTSASDSALVATTTFSSSDEIMHGSSYSHVSLPPFPCSDFSDSFCHSSSSSSQFLSRHDQAVDDFTQIPYIF* 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2911 189 Coils Coil 90 110 - -
Amo05g2911 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 21 1 163 - -
Amo05g2911 189 ProSiteProfiles LOB domain profile. 10 111 IPR004883 -
Amo05g2911 189 Pfam Lateral organ boundaries (LOB) domain 11 108 IPR004883 -
Amo05g2911 189 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2911 Amo-Chr5 81471886 81472455 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2911 1 111 AS2 family AT3G11090 81.081 1.64e-64 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Amo05g2911 LOB 1.6e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2911 - - gmx:100305534 252.292