Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2901 ATGAACCAGCAGGACGAGAAAGCCACCATGGATCTTGTTCCACCCTCTGAGCACCTCTGCTACGTTCGTTGCAACTTCTGCAACACTGTGCTTGCGAGGCTGCTGGATACTGTGACAGTGAAGTGTGGTCACTGCAGCAACCTCTCGTTTCTGAGCACCAGGCCCCCTCCACCTCCAGCCCCTTTCTCTCACACCCATCAAACCACCACCATTGATCACACTCTCACTCTCCAGGGTTTCTACGGTGATTCGAAGAAGGGGCAAGGATCATCTTCATCGTCCTCACCAACTACATCAAACGAATCAGTCTCCCCTAAAGCAGCACCTTTTGTTGTCAAACCACCTGAGAAGAAGCACCGTCTTCCATCTGCATACAACCGTTTCATGAAAGAGGAGATTCAGCGCATCAAAGCAGCCAACCCTGAGATCCCACATCGAGAAGCTTTCAGCGCTGCAGCCAAAAATTGGGCAAGGTTCATTCCAAATTCGCCTACAAGCTCAGTTGCTGCAAGAATGAGAGAGTGGTGGCAAAAGGAGATATTCGGAGAGAAAAGCAACATTTTGGCAAGGCAAAAGCGCTAG 582 0.5034 MNQQDEKATMDLVPPSEHLCYVRCNFCNTVLARLLDTVTVKCGHCSNLSFLSTRPPPPPAPFSHTHQTTTIDHTLTLQGFYGDSKKGQGSSSSSSPTTSNESVSPKAAPFVVKPPEKKHRLPSAYNRFMKEEIQRIKAANPEIPHREAFSAAAKNWARFIPNSPTSSVAARMREWWQKEIFGEKSNILARQKR* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2901 193 PANTHER PROTEIN YABBY 6-RELATED 8 169 IPR006780 GO:0007275
Amo05g2901 193 MobiDBLite consensus disorder prediction 79 118 - -
Amo05g2901 193 PANTHER PROTEIN CRABS CLAW 8 169 - -
Amo05g2901 193 MobiDBLite consensus disorder prediction 79 105 - -
Amo05g2901 193 SUPERFAMILY HMG-box 104 158 IPR036910 -
Amo05g2901 193 Gene3D High mobility group box domain 113 163 IPR036910 -
Amo05g2901 193 Pfam YABBY protein 15 159 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2901 Amo-Chr5 80608421 80610799 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2901 5 184 C2C2-YABBY Transcription Factor Family AT1G69180 57.143 7.31e-58 178
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Amo05g2901 YABBY 6.3e-50 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2901 K25796 - gmx:100819079 251.521