Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2874 ATGTCTCGCACGTGCTCACAGTGTGGAAATAACGGGCACAACTCCCGCACATGCACAGACGCTTCTCTCGCTGCCGGATCGGTCTCCGGCGGCGGAACCCCTCAAAGAGAGAACGGCATCATGCTCTTCGGCGTAAGACTCACCACCACCGAAGGGACCTCATCGTCATTCAGAAAAAGTGCTAGTATGGGTAATTTGTCACAGTTTGATCAACAACCACCGCAGGATCCAATCGTTGCTGACGCCGGCTATGTGTCCGATGACGTCGTTCACGCCTCCGGCCGCAGCCGCGAGCGCAAACGAGGTGTTCCTTGGACTGAAGAGGAGCACAAATTGTTCTTGTTGGGTTTACACAAGGTTGGAAAAGGTGACTGGAGAGGAATTTCTAGAAATTTTGTGAAGACTCGGACTCCAACTCAGGTTGCTAGTCACGCACAGAAATATTTCCTCCGCCGCCACAATCAGAACCGCCGCCGCAGAAGATCTAGTCTGTTTGATATCACCACTGATACGGTGATGGAATCCTCTGGCATGATGGAAGAGCAAGTTGAGCAAGAAACTGTTGCGCCACCCACACCCTCTACATACAACAACTTATCTAGCTCTACTTTCCCCATGGCTTTATCTTGTGTGATGTTGCCATTAGCTGCCAAACCAATAAGGCCAACGCCTATTTTGCCTGTGCCACCATCTTCTAAGATGGCTAATTTGAACCTGAAAGAGAAAATAACTCTGAATACAGAATTTCGACCTCCACCATTTGTTCTTAACTTAGGGCCGCAGCAATTCCGGAATCAGTCCCCAGACGAAAATAATGATCGCTCCTCACCATCCTCGTCATCCACGTCGTCTTTTCAAGCAGGAAATTTCACTGGTGGTGGAGATAGCATAATTAGTGTTGCTTGA 906 0.4923 MSRTCSQCGNNGHNSRTCTDASLAAGSVSGGGTPQRENGIMLFGVRLTTTEGTSSSFRKSASMGNLSQFDQQPPQDPIVADAGYVSDDVVHASGRSRERKRGVPWTEEEHKLFLLGLHKVGKGDWRGISRNFVKTRTPTQVASHAQKYFLRRHNQNRRRRRSSLFDITTDTVMESSGMMEEQVEQETVAPPTPSTYNNLSSSTFPMALSCVMLPLAAKPIRPTPILPVPPSSKMANLNLKEKITLNTEFRPPPFVLNLGPQQFRNQSPDENNDRSSPSSSSTSSFQAGNFTGGGDSIISVA* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2874 301 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 153 IPR017930 -
Amo05g2874 301 SUPERFAMILY Homeodomain-like 99 152 IPR009057 -
Amo05g2874 301 SMART sant 101 151 IPR001005 -
Amo05g2874 301 CDD SANT 104 149 IPR001005 -
Amo05g2874 301 MobiDBLite consensus disorder prediction 259 293 - -
Amo05g2874 301 Gene3D - 103 154 - -
Amo05g2874 301 PANTHER TRANSCRIPTION FACTOR MYB1R1-LIKE 1 298 - -
Amo05g2874 301 ProSiteProfiles Zinc finger CCHC-type profile. 5 20 IPR001878 GO:0003676|GO:0008270
Amo05g2874 301 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 100 151 IPR006447 GO:0003677
Amo05g2874 301 PANTHER TRANSCRIPTION FACTOR KUA1 1 298 - -
Amo05g2874 301 ProSiteProfiles SANT domain profile. 100 153 IPR017884 -
Amo05g2874 301 MobiDBLite consensus disorder prediction 254 301 - -
Amo05g2874 301 Pfam Myb-like DNA-binding domain 104 149 IPR001005 -
Amo05g2874 301 ProSiteProfiles Myb-like domain profile. 97 149 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2874 Amo-Chr5 78748299 78750622 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g2874 Myb_DNA-binding 1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2874 - - gmx:778178 344.739