Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2862 ATGATGATGAGCTCACAGCACTTCAATAATGGTGGAAGTGATGGTGGTGGTAGGTTCTTCCCTTCACTCCCTGTTCCTCCTTCTTCTTTTCCCCTTGTTGTTCCTCCTCCTCCACCTTCTCTGTCCAACACTTCAGGGGTTGTTGTGATGGGTCATCATCATCATCATCATGCAAATGGGGTAGAGGATCCTGAACTTATCATGATGGGGCTTCAGATTTTGAGCTCTTCAAAGTGGAAAATGGGAACCAACAACAACAGTGAAAACAAGAGCTTGTCTTTGAAGATTGGCGACGAGGAAGATGAAATAGATGGAGGAGAAGAAAGAGAAGAAGGTAATAATAAAGGGCCTTGTTCTTCTTCTTCCAATGGAGGAAAAATTGGGCATGTGAAACTCTGTGCTAGAGGCCATTGGAGACCTGCTGAAGATGCACAACTCAAGGCCCTTGTTTCTCAATATGGCCCTCAAAACTGGAACCTCATTGCAGAACATCTCAAAGGAAGATCAGGTAAGAGTTGTAGACTAAGGTGGTTTAATCAGCTAGATCCAAGAATTAACAGAAGAGCTTTCTGTGAAGAAGAAGAGGAGAGACTCTTAACTGCACACAGAATGTATGGTAACAAATGGGCCATGATTGCAAGACTGTTCCCTGGAAGAACAGATAATGCAGTCAAGAATCACTGGCATGTGATCATGGCTCGAAAGCAGAGAGAGCAATCAAGCATGTATAGAAGGAGAAAACCTACTCCTGTGTTTTCTCCTCCTTCTGTTGAAGAAGAAGGTGGTGTTCTTCTTCCTCCACCCAAGGCTTTGGAATTGACTCTATCATCAAACAATAATAATGTAGCCAGTGATGATCAGTTAACTATCTCAGATGAATCTGTCTCAACAGAACTAACTGCTCCTACTTCATTTTTTCATAAGATTGGTWAAGGTGTGGGTGGAATGAATGTAGGTTATGAGAAATTCTATGGTGGTTGGAATAATGGAAAACTTAAGTGTGTGGACCAATCAAATTTTTCAGAATCAAATAACTCATCATCAGAAGTCTCAGTATCTGAGTCAGTAGGCACCACCAATAGGTCCTATCTCTCAATTTCTGGAYAGAGTGAAAACCATAACATCAGGAACAAGATTAACAACATGCCAGCATTCATTGATTTTCTTGGGGTTGGAGCTACATAA 1185 0.416 MMMSSQHFNNGGSDGGGRFFPSLPVPPSSFPLVVPPPPPSLSNTSGVVVMGHHHHHHANGVEDPELIMMGLQILSSSKWKMGTNNNSENKSLSLKIGDEEDEIDGGEEREEGNNKGPCSSSSNGGKIGHVKLCARGHWRPAEDAQLKALVSQYGPQNWNLIAEHLKGRSGKSCRLRWFNQLDPRINRRAFCEEEEERLLTAHRMYGNKWAMIARLFPGRTDNAVKNHWHVIMARKQREQSSMYRRRKPTPVFSPPSVEEEGGVLLPPPKALELTLSSNNNNVASDDQLTISDESVSTELTAPTSFFHKIGXGVGGMNVGYEKFYGGWNNGKLKCVDQSNFSESNNSSSEVSVSESVGTTNRSYLSISGXSENHNIRNKINNMPAFIDFLGVGAT* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2862 394 CDD SANT 138 179 IPR001005 -
Amo05g2862 394 Pfam Myb-like DNA-binding domain 135 181 IPR001005 -
Amo05g2862 394 Pfam Myb-like DNA-binding domain 188 230 IPR001005 -
Amo05g2862 394 MobiDBLite consensus disorder prediction 1 25 - -
Amo05g2862 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 135 181 IPR017930 -
Amo05g2862 394 SMART sant 134 183 IPR001005 -
Amo05g2862 394 SMART sant 186 234 IPR001005 -
Amo05g2862 394 MobiDBLite consensus disorder prediction 80 123 - -
Amo05g2862 394 CDD SANT 192 229 IPR001005 -
Amo05g2862 394 SUPERFAMILY Homeodomain-like 135 228 IPR009057 -
Amo05g2862 394 Gene3D - 189 247 - -
Amo05g2862 394 Gene3D - 135 186 - -
Amo05g2862 394 ProSiteProfiles Myb-like domain profile. 135 181 IPR001005 -
Amo05g2862 394 PANTHER OS08G0435700 PROTEIN 84 394 - -
Amo05g2862 394 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 182 236 IPR017930 -
Amo05g2862 394 ProSiteProfiles Myb-like domain profile. 182 232 IPR001005 -
Amo05g2862 394 PANTHER MYB PROTEIN-RELATED 84 394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2862 Amo-Chr5 78033608 78035624 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2862 134 254 MYB Transcription Factor Family AT1G69560 82.645 1.01e-69 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g2862 Myb_DNA-binding 2.6e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2862 K09422 - twl:119996400 295.819