Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2860 ATGGGAGTAAGAACATGCAGAATTATAAATAAGGTTATATACTCAACTCTAAAAGAGATAAAAGACATTAATGGAGATATTGAACTGAAAGATATTAACTTCAGATATCCTGCTAGGCCAAATGTGCAGATCTTTGCTGGATTCTCATTGTGTGTTCCAAATGGCACAACTGCTGCTTTGGTTGGTCAAAGTGGCAGTGGCAAGTCAACTGTGATAAGTTTATTGGAAAGATTCTATGATCCTAATGCTGGAGAAGTACTCACAGATGGAGTCAACTTAAAGAATTTCCAATTTAGATGGATAAGAGAACAAATTGGTTTGGTTAGTCAAGAACCGACTCTTTTTACAGCTAGTATCAAAGACAACATTGCTTATGGAAAAGAAAGTGCAACTGATGAGGAGATAATGACAGCAATAACACTTGCCAATGCTAAAAAATTCATTGACAAGTTGCCTCAGGGAATTAACACAATGGCAGGGGAGCATGGCACGCAACTTTCTGTTGGCCAAAAGCAAAGAATTGTCATAGCAAGGGCAATTTTGAAGAATCCTAAAATTCTGCTTCTTGATGAAGCCACAAGTGCATTGGATGCTGAATCTGAACGTGTTATTCAAGAAGCCTTAGAAAAAGCCATGTCAAATAGGACTACTGTAGTTGTTGCACATCGTTTAACAACTATTAAGAATGCTGACACTATTTCTGTGGTTCAACAGGGGAAAATCGTTGAAAAAGGTAATACAATTTCTTTTTCCTCAGACAAAACTAGTTTGAAATGTGTTATGTTGTATCATTATCATGTTAAATTTCCATTCCTGCAGCATGTTGAAAGGTCTCATGATGAGTTCATCAAGGACCCTGAGGAAGGGGAAAAAAATGAGGATGAAGATAGCAGAATTTTTGAAGCAGATTTAGATAGAGCTTCCTTCCACAAACCATCGAATTTGAGATCATTAAGCCGAGGTTCATCATGGAGCAGGCGTTCTCATTCAAATAACATTGTTGCCCCTTTAACTTCACAAAGTTCAGTACAAGAAAGAGGTGATGGCGATGTTGAAACTGGTGAACACAGTGATAAGAAGTGCAAAAACGTTTCAATGAAACACTTGGCCTATTTGAACAAACCTGAACTTCCTGTGTTACTGCTTGGAGGCATTGAAAGGATTCGCTCGTTGACAATCCAGAAGGTTATGCACCAAGAAATCAGTTGGTTTGATCATCCTGAAAACGCAAGAAATGAATCAACTTTCAGTGGTTCAATCGGTGCAAGACTATCTACTGATGCTTTAACAGTAAGAAGTCTTGTCGGTGACACATTGGCCCTCATTGTGCAAAACATATCCACAATCATAGCAGGCCTAATTATAGCTTTCACTGCTAATTGGATTCTAGCTTTTGTTAATTTTTCAGTAATGTCACCATGTTTTGTATACAACATGATAAGATTCTGTGTTGTCTGGTATAGTTGA 1467 0.3776 MGVRTCRIINKVIYSTLKEIKDINGDIELKDINFRYPARPNVQIFAGFSLCVPNGTTAALVGQSGSGKSTVISLLERFYDPNAGEVLTDGVNLKNFQFRWIREQIGLVSQEPTLFTASIKDNIAYGKESATDEEIMTAITLANAKKFIDKLPQGINTMAGEHGTQLSVGQKQRIVIARAILKNPKILLLDEATSALDAESERVIQEALEKAMSNRTTVVVAHRLTTIKNADTISVVQQGKIVEKGNTISFSSDKTSLKCVMLYHYHVKFPFLQHVERSHDEFIKDPEEGEKNEDEDSRIFEADLDRASFHKPSNLRSLSRGSSWSRRSHSNNIVAPLTSQSSVQERGDGDVETGEHSDKKCKNVSMKHLAYLNKPELPVLLLGGIERIRSLTIQKVMHQEISWFDHPENARNESTFSGSIGARLSTDALTVRSLVGDTLALIVQNISTIIAGLIIAFTANWILAFVNFSVMSPCFVYNMIRFCVVWYS* 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2860 488 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 387 466 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g2860 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 20 247 IPR027417 -
Amo05g2860 488 Pfam ABC transporter 48 194 IPR003439 GO:0005524
Amo05g2860 488 SUPERFAMILY ABC transporter transmembrane region 387 477 IPR036640 GO:0005524|GO:0016021
Amo05g2860 488 Pfam ABC transporter transmembrane region 386 474 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Amo05g2860 488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 27 263 IPR003439 GO:0005524
Amo05g2860 488 SMART AAA_5 54 246 IPR003593 -
Amo05g2860 488 CDD ABC_MTABC3_MDL1_MDL2 27 245 - -
Amo05g2860 488 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 385 471 - -
Amo05g2860 488 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 18 385 - -
Amo05g2860 488 PANTHER - 385 471 - -
Amo05g2860 488 PANTHER - 18 385 - -
Amo05g2860 488 ProSitePatterns ABC transporters family signature. 166 180 IPR017871 GO:0005524
Amo05g2860 488 MobiDBLite consensus disorder prediction 313 359 - -
Amo05g2860 488 Gene3D - 18 252 IPR027417 -
Amo05g2860 488 MobiDBLite consensus disorder prediction 313 347 - -
Amo05g2860 488 Gene3D ABC transporter type 1, transmembrane domain 333 483 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2860 Amo-Chr5 77709685 77712098 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2860 386 465 Calmodulin-binding Proteins AT2G36910 36.250 2.59e-09 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2860 K05658 - gmx:100792531 442.965