Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2818 ATGCTGAAATCGGGGATGATGGGAATGGAGGAGAGGAAACAGGCGAAGAAACCAGCACAAGCCAGCTCCAGAAAGGGTTGTATGAGAGGGAAAGGTGGCCCTGAGAATGCGAGCTGCACCTATAAGGGTGTTAGGCAGAGAACTTGGGGCAAATGGGTTGCTGAGATCCGTGAACCCAATCGTGGTGCTCGTCTCTGGCTTGGTACCTTTGAGACCTCTCATGAAGCTGCTCTTGCTTATGATACTGCTGCTCGTAAGCTCTATGGCCCTGATGCTAAGCTCAATCTCCCTCTTCATCACCATCACCATTCTTCTTCTTCTTCTTCTTCTTCTAGTAATTCCTCCCAAATTCAACACAACCACCCTCTTATTAATAATATTATTACTACTCCACCACCAGCAACACCACTTATTAGTTCTTCTTGTAATAATAGCTTCAACACAGCGTCGTCCATGGTGGCCTCTCTTCATCAGCAAGTTGGGCCACCAATATACAGCAGTGATTCTTCATCCATTGTGTCTTCTTCCCTTCCATTGGACACCACCAACAATAAGGAGGAGGATGTTCTTCGACCGTTCTGGGGATCAGTGAATGATTGTTTGCCTGTGTTTGATGAATCAATCTGGACAGAAGCAGCCATGTCCCTTGATTTCCCTGTAATTGCTGCTGCAGAGGCTGCCACTGGAATTTACCCAAACGCCAACTTGGCAGATGTTGGTGTTTGGGACACCCCATGGTGCATGTAA 747 0.4726 MLKSGMMGMEERKQAKKPAQASSRKGCMRGKGGPENASCTYKGVRQRTWGKWVAEIREPNRGARLWLGTFETSHEAALAYDTAARKLYGPDAKLNLPLHHHHHSSSSSSSSSNSSQIQHNHPLINNIITTPPPATPLISSSCNNSFNTASSMVASLHQQVGPPIYSSDSSSIVSSSLPLDTTNNKEEDVLRPFWGSVNDCLPVFDESIWTEAAMSLDFPVIAAAEAATGIYPNANLADVGVWDTPWCM* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2818 248 SUPERFAMILY DNA-binding domain 40 98 IPR016177 GO:0003677
Amo05g2818 248 MobiDBLite consensus disorder prediction 95 118 - -
Amo05g2818 248 Gene3D AP2/ERF domain 40 99 IPR036955 GO:0003700|GO:0006355
Amo05g2818 248 PRINTS Ethylene responsive element binding protein signature 41 52 IPR001471 GO:0003700|GO:0006355
Amo05g2818 248 PRINTS Ethylene responsive element binding protein signature 63 79 IPR001471 GO:0003700|GO:0006355
Amo05g2818 248 MobiDBLite consensus disorder prediction 101 118 - -
Amo05g2818 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2D 15 225 - -
Amo05g2818 248 SMART rav1_2 40 103 IPR001471 GO:0003700|GO:0006355
Amo05g2818 248 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 15 225 - -
Amo05g2818 248 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Amo05g2818 248 MobiDBLite consensus disorder prediction 1 39 - -
Amo05g2818 248 Pfam AP2 domain 40 89 IPR001471 GO:0003700|GO:0006355
Amo05g2818 248 ProSiteProfiles AP2/ERF domain profile. 40 97 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2818 Amo-Chr5 73623824 73625513 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2818 6 115 AP2-EREBP Transcription Factor Family AT1G75490 71.818 2.40e-50 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g2818 AP2 2.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2818 - - gmx:100797850 273.092