Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2785 ATGTTACACCACATTAACAGTAACTCATCCACAAAACAAAGAAAAAGGAAAAGGAAAATGGAAATGGATATGGAAAAGATGCAAAATCAAAGTGTGCATTTTGTTCTATCCACTGATGCAAAACCAAGGCTTAAATGGACTCCTGAGCTTCACCAAAGATTCATTGAGGCAGTTCATCAGCTTGGAGGTGCAGAGAAAGCAACCCCAAAGAGTCTTATGAGAGTGATGGGGATACAAGGACTTACTTTGTACCACTTGAAGAGCCATTTACAGAAATATAGACTTGGGAAAAGCCACCAGCTAGAAACCTGTTCTGACAACCAACAAGAAGATTGCAGAAAAATCAAGAGCAGTCATGGTCATTGCAGCAAGGAAAACAGTGTTGGGGAACAGAAACAAGTCACTGAGAACATGAAGATAGCTCAGGCTCTCCATATGCAAATGGAGGTACAAAGGAAACTTTGTGAACAAATTGAGGTGCAGAAACATTTACAGCTTCGAATTGAAGCTCAAGGGAAGTACTTGCAATCGGTGTTAAAGAAAGCGCAAGAGACGCTTCAAGGATACAATTCTTCCTCAATAGGACTAGAACTCACAAAAGCAGAACTCTCTCAACTAGTTACAGTAATCAACAATGCTTGTCCAGGTTCTCCAATCTCAGAACTCACAGAAACCAGAGGGTTAAGTTTGAGAAGTGATGACGAGAGGAAACAAGACAAGGGAACCATGTGCTCATTGGAGAGTTCTTTGACATCTTCTGAAAGCTGTGGGAGAAAGGAAGAGATACACCAGCCAATGGAAGAAGAAACAAGATGGAACTTGAAAAGTTTTAATGAAATTTCACTTGAATTTCCCTTTGAGGCATTTCATCAAACAGGTAAAGGGCAAAGTGGGGATGACTCGAGTAAAGAAGAAAGAGTGAGAAAGAGAAATGCAAAAACTGATTCTGAAGGTAGCTACTGTGTTGAGCAACCATCTGGGAAAAGATGTGGCAACAAATTGAGAAAACTTGAATTTGACTTAAACAACCAATATCACAATGACACGGACTCAAGATGA 1059 0.4013 MLHHINSNSSTKQRKRKRKMEMDMEKMQNQSVHFVLSTDAKPRLKWTPELHQRFIEAVHQLGGAEKATPKSLMRVMGIQGLTLYHLKSHLQKYRLGKSHQLETCSDNQQEDCRKIKSSHGHCSKENSVGEQKQVTENMKIAQALHMQMEVQRKLCEQIEVQKHLQLRIEAQGKYLQSVLKKAQETLQGYNSSSIGLELTKAELSQLVTVINNACPGSPISELTETRGLSLRSDDERKQDKGTMCSLESSLTSSESCGRKEEIHQPMEEETRWNLKSFNEISLEFPFEAFHQTGKGQSGDDSSKEERVRKRNAKTDSEGSYCVEQPSGKRCGNKLRKLEFDLNNQYHNDTDSR* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2785 352 Gene3D - 40 98 - -
Amo05g2785 352 MobiDBLite consensus disorder prediction 227 242 - -
Amo05g2785 352 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 26 351 IPR044848 GO:0003700
Amo05g2785 352 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 26 351 - -
Amo05g2785 352 Pfam MYB-CC type transfactor, LHEQLE motif 138 185 IPR025756 -
Amo05g2785 352 MobiDBLite consensus disorder prediction 289 329 - -
Amo05g2785 352 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 41 96 IPR006447 GO:0003677
Amo05g2785 352 Pfam Myb-like DNA-binding domain 43 94 IPR001005 -
Amo05g2785 352 SUPERFAMILY Homeodomain-like 40 96 IPR009057 -
Amo05g2785 352 MobiDBLite consensus disorder prediction 297 316 - -
Amo05g2785 352 Coils Coil 10 30 - -
Amo05g2785 352 MobiDBLite consensus disorder prediction 1 22 - -
Amo05g2785 352 MobiDBLite consensus disorder prediction 224 245 - -
Amo05g2785 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 38 98 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2785 Amo-Chr5 70407413 70409374 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2785 34 225 G2-like Transcription Factor Family AT1G69580 56.716 1.16e-69 219
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Amo05g2785 Myb_DNA-binding 1.5e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2785 - - gmx:100787178 425.631
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2785 05 70407413 70409374 Amo15g0571 15 36705199 36706661 hybridization