Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2783 ATGGCATCCGAGCCTGACGTTTTCGAAAGATTTGTTAGAAACAGAGATATGACTCTGTTTTTGCCTTTCCTCTTTGGCTTCTCTGATTCTCAGTCTCGGGATTCTTCATCGCAAAACCAAGATAACGACGAAATGGGAGAAAGGATCGCCGATACTCCCAACCGAGAGAGGATCATACTAGTAAACCCCTTCACGCAAAGCATGGTTGTCATCGACGGCGCTTCAAGCCTCGAAGCTCTGTTTCGCGACATGGCCGTTAACAACAGCAGCAAAGCCGGAAGACCTCCAGCTACGAAGGAATCCATTGACGCCATGCCGAGCTTTGTAATCAAAGAAGGTGAAGTTGAAGTAGGAGAGTGTGTTGTGTGTTTGGAGGATTTTGGTGTTGGTGCTTTGGTTAAAGAGATGCCATGTAGGCACAGGTTTCATCCGAATTGCATTGAGAAGTGGCTTGGGATGCATGGAACTTGCCCTGTTTGCAGGTACGAGATGCCGGTTGAGGAAAAAGATGAAGGGAAGAAGAGGGATAGTGAAGGAGAAGAAGAACAAGAAGGAGGAGAAAGAGAGAGGAGAAGAATCGGTAATGGTGAAGTTTGGGTTAGTTTTTCTTTTAACAGGGGTATTAGTAGGAGACATAACGACGATCAGAATCACAATCAGAATCAAAATCAAGATTCTTCTGGTGGTGGTGATGATGATCCTAATTCGGGTGATTATGCATCATCAACTGCTGGAGGTGATGCTGAAGCAGAAAATTAG 759 0.4532 MASEPDVFERFVRNRDMTLFLPFLFGFSDSQSRDSSSQNQDNDEMGERIADTPNRERIILVNPFTQSMVVIDGASSLEALFRDMAVNNSSKAGRPPATKESIDAMPSFVIKEGEVEVGECVVCLEDFGVGALVKEMPCRHRFHPNCIEKWLGMHGTCPVCRYEMPVEEKDEGKKRDSEGEEEQEGGERERRRIGNGEVWVSFSFNRGISRRHNDDQNHNQNQNQDSSGGGDDDPNSGDYASSTAGGDAEAEN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2783 252 ProSiteProfiles Zinc finger RING-type profile. 120 161 IPR001841 -
Amo05g2783 252 MobiDBLite consensus disorder prediction 30 51 - -
Amo05g2783 252 Pfam Ring finger domain 119 161 IPR001841 -
Amo05g2783 252 MobiDBLite consensus disorder prediction 209 252 - -
Amo05g2783 252 SUPERFAMILY RING/U-box 104 166 - -
Amo05g2783 252 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 12 173 - -
Amo05g2783 252 MobiDBLite consensus disorder prediction 219 242 - -
Amo05g2783 252 MobiDBLite consensus disorder prediction 167 194 - -
Amo05g2783 252 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 83 167 IPR013083 -
Amo05g2783 252 CDD RING-H2_PA-TM-RING 119 161 - -
Amo05g2783 252 PANTHER - 12 173 - -
Amo05g2783 252 SMART ring_2 120 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2783 Amo-Chr5 70399287 70400444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2783 10 207 C3H Transcription Factor Family AT1G26800 52.020 5.20e-62 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2783 - - adu:107489464 433.335
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2783 05 70399287 70400444 Amo15g0573 15 36715600 36716840 hybridization