Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2771 ATGGCTTTAAAAGTGCCCGCTCAGCTCCCAGTTGATCCCTCGCCGCCGGCGGCGGAAGTGGTCCACGGATCTTCTGGATCCGCTCCGGCAGCGGATCGCGACGTTGAGTTGGAACACGGCGGCGATGATGACGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGCCAGGAGGAGGACGGTGTCTCCAATTTGGAAAGCCCCTGCGCCTGCAGCGGAAGTCTGAAGTATGCACACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAGGGAGACATAACTTGTGAGATATGCCATCAGCCTTACCAACCTGGTTATACTGCTCCACCACCACGCCCTCAGCCTGAAGAAACCACCATTGACATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCTGAACGCCAATTTTTGGATGCGGAATATGATGAATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCTGCAGCTCTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCACTGATGGTGATGCTTCTGATGATGACCCATCCAATTTTTTCTCCCTTTTCTTGCTACGTGCTGCTGGATTTCTTTTACCTTGCTATATAATGGCTTGGGCAATTAGTATTCTGCAACGTCGGCGACAGAGACAGGAAGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTCCTACAGTCTGGGCAGCACAGGGGGCTACAATTTGCCATAGCCCCAGGACCACCACCCACTGTACAGCAGGAACAAGTGTGA 822 0.5243 MALKVPAQLPVDPSPPAAEVVHGSSGSAPAADRDVELEHGGDDDEEPLIQMAECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPPPTVQQEQV* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2771 273 CDD RING_CH-C4HC3_MARCH 54 100 - -
Amo05g2771 273 SMART ringv_2 53 100 IPR011016 GO:0008270
Amo05g2771 273 Coils Coil 142 162 - -
Amo05g2771 273 PANTHER E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED 10 262 - -
Amo05g2771 273 MobiDBLite consensus disorder prediction 1 43 - -
Amo05g2771 273 Pfam RING-variant domain 54 99 IPR011016 GO:0008270
Amo05g2771 273 Pfam Protein of unknown function (DUF3675) 105 224 IPR022143 -
Amo05g2771 273 ProSiteProfiles Zinc finger RING-CH-type profile. 46 106 IPR011016 GO:0008270
Amo05g2771 273 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 40 109 IPR013083 -
Amo05g2771 273 PANTHER RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING 10 262 IPR033275 -
Amo05g2771 273 SUPERFAMILY RING/U-box 52 104 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2771 Amo-Chr5 69345383 69348202 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2771 42 99 C3H Transcription Factor Family AT2G37950 42.623 4.25e-08 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2771 - - gmx:100779674 441.039