Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Amo05g2771 | ATGGCTTTAAAAGTGCCCGCTCAGCTCCCAGTTGATCCCTCGCCGCCGGCGGCGGAAGTGGTCCACGGATCTTCTGGATCCGCTCCGGCAGCGGATCGCGACGTTGAGTTGGAACACGGCGGCGATGATGACGAGGAGCCGCTGATCCAGATGGCGGAGTGCCGCATTTGCCAGGAGGAGGACGGTGTCTCCAATTTGGAAAGCCCCTGCGCCTGCAGCGGAAGTCTGAAGTATGCACACAGAAAGTGTGTCCAGCATTGGTGCAATGAGAAGGGAGACATAACTTGTGAGATATGCCATCAGCCTTACCAACCTGGTTATACTGCTCCACCACCACGCCCTCAGCCTGAAGAAACCACCATTGACATAGGAGGAGGCTGGACAATATCTGGCACGCCTTTGGACTTGCGTGATCCTCGACTATTGGCAATTGCAGAGGCTGAACGCCAATTTTTGGATGCGGAATATGATGAATATGCTGCTTCTAATGCCAGTGGAGCTGCATTTTGCCGCTCTGCAGCTCTAATTTTAATGGCCCTTTTACTCTTGCGGCATGCACTTTCTGTCACTGATGGTGATGCTTCTGATGATGACCCATCCAATTTTTTCTCCCTTTTCTTGCTACGTGCTGCTGGATTTCTTTTACCTTGCTATATAATGGCTTGGGCAATTAGTATTCTGCAACGTCGGCGACAGAGACAGGAAGCTGCAGCACTAGCAGCAACCCAAGTTGCTTTTGTCCTACAGTCTGGGCAGCACAGGGGGCTACAATTTGCCATAGCCCCAGGACCACCACCCACTGTACAGCAGGAACAAGTGTGA | 822 | 0.5243 | MALKVPAQLPVDPSPPAAEVVHGSSGSAPAADRDVELEHGGDDDEEPLIQMAECRICQEEDGVSNLESPCACSGSLKYAHRKCVQHWCNEKGDITCEICHQPYQPGYTAPPPRPQPEETTIDIGGGWTISGTPLDLRDPRLLAIAEAERQFLDAEYDEYAASNASGAAFCRSAALILMALLLLRHALSVTDGDASDDDPSNFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAIAPGPPPTVQQEQV* | 274 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Amo05g2771 | 273 | CDD | RING_CH-C4HC3_MARCH | 54 | 100 | - | - | |
Amo05g2771 | 273 | SMART | ringv_2 | 53 | 100 | IPR011016 | GO:0008270 | |
Amo05g2771 | 273 | Coils | Coil | 142 | 162 | - | - | |
Amo05g2771 | 273 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE MARCH-RELATED | 10 | 262 | - | - | |
Amo05g2771 | 273 | MobiDBLite | consensus disorder prediction | 1 | 43 | - | - | |
Amo05g2771 | 273 | Pfam | RING-variant domain | 54 | 99 | IPR011016 | GO:0008270 | |
Amo05g2771 | 273 | Pfam | Protein of unknown function (DUF3675) | 105 | 224 | IPR022143 | - | |
Amo05g2771 | 273 | ProSiteProfiles | Zinc finger RING-CH-type profile. | 46 | 106 | IPR011016 | GO:0008270 | |
Amo05g2771 | 273 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 40 | 109 | IPR013083 | - | |
Amo05g2771 | 273 | PANTHER | RING/FYVE/PHD ZINC FINGER DOMAIN-CONTAINING | 10 | 262 | IPR033275 | - | |
Amo05g2771 | 273 | SUPERFAMILY | RING/U-box | 52 | 104 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Amo05g2771 | Amo-Chr5 | 69345383 | 69348202 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Amo05g2771 | 42 | 99 | C3H Transcription Factor Family | AT2G37950 | 42.623 | 4.25e-08 | 50.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Amo05g2771 | - | - | gmx:100779674 | 441.039 |