Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2766 ATGGACTTGACCCCAATTGATGCAAGCACCACCCACACCCAAACCCAAACCATAGAACACACAAACTCACAACAAACACAAACCCCACCACAACCAACAACGAACGGTTCCCTCAAACGCCACCACCCGCTCCCGACCACCGCTATTGCGGCCGCACCACCACTCTCCATGGTAATTTCCTACAAGGAGTGCCTCAAGAACCATGCAGCCACCATCGGCGGCCACGCCCTCGACGGCTGCGGCGAGTTCATGCCCTCCTCCTCCTCCAACCCCTCTGAGCCACGCTCCCTCACTTGCGCCGCATGTGGCTGCCACCGCAACTTCCACCGCCGCGACCCAGAATCCCTCCTCCCCCACCACCACCACCACCACCCAAACTTCCTCAGCTTCTACCACCACTCATCATCGCCGCCTCTCCCCCAGCGTGGTGGACTCAGCCTCAGCACAAGCCCAAGCACAACAAGCCCAAGCCCAAGCCCATCAGCAAGTCCAATTTCAAGCCCATCATCACCACCACCTGCCCCACTCTCTCACCACTTTCCTCCTCCTCCTCCGTACTCCTCCTTCCACCACCATCACATGAATAATAATTCTCCATCTACCGTTGTTGTTCCCAACATGCTCTTATCCCTTGGAAATGCCGCATGCTCTTCCGGTTCTGGATTCAACCACCACCACCACCACCAGAAAGACTTGAACAGCTCGAAGAAGAGGCATAGGACCAAGTTCAGCAAGGAACAGAAGGAGAAGATGCTGAGATTCTCAGAGAAGCTTGGTTGGAGAATGCAGAGAGATGAAGATGGTTTGATTCAAGAGTTTTGCAACCAAATTGGGGTTTCTAGAGGGGTCTTCAAGGTTTGGATGCACAACAACAAGAACACCTTCTTCAGAAACAGGAACAACAACAACAACAACGATAATGCTTCTGCTGCAGAAAAGAATGGGAGTCTTAATGGTGTTGATAATGGTAACCATATCGATAACGATAATGATGATGATCATAATAATAATGATAATGGAAATGGTAATCAACACAGCAACAACACTAGTAGCAGCAACGATGACATTCACAGAGATTATTAA 1083 0.5088 MDLTPIDASTTHTQTQTIEHTNSQQTQTPPQPTTNGSLKRHHPLPTTAIAAAPPLSMVISYKECLKNHAATIGGHALDGCGEFMPSSSSNPSEPRSLTCAACGCHRNFHRRDPESLLPHHHHHHPNFLSFYHHSSSPPLPQRGGLSLSTSPSTTSPSPSPSASPISSPSSPPPAPLSHHFPPPPPYSSFHHHHMNNNSPSTVVVPNMLLSLGNAACSSGSGFNHHHHHQKDLNSSKKRHRTKFSKEQKEKMLRFSEKLGWRMQRDEDGLIQEFCNQIGVSRGVFKVWMHNNKNTFFRNRNNNNNNDNASAAEKNGSLNGVDNGNHIDNDNDDDHNNNDNGNGNQHSNNTSSSNDDIHRDY* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2766 360 Pfam ZF-HD protein dimerisation region 59 113 IPR006456 -
Amo05g2766 360 MobiDBLite consensus disorder prediction 132 156 - -
Amo05g2766 360 MobiDBLite consensus disorder prediction 296 360 - -
Amo05g2766 360 MobiDBLite consensus disorder prediction 132 193 - -
Amo05g2766 360 MobiDBLite consensus disorder prediction 229 244 - -
Amo05g2766 360 MobiDBLite consensus disorder prediction 1 41 - -
Amo05g2766 360 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 61 112 IPR006456 -
Amo05g2766 360 Gene3D - 221 295 - -
Amo05g2766 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 36 305 - -
Amo05g2766 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 9 36 305 - -
Amo05g2766 360 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Amo05g2766 360 MobiDBLite consensus disorder prediction 296 324 - -
Amo05g2766 360 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 61 112 IPR006456 -
Amo05g2766 360 MobiDBLite consensus disorder prediction 218 245 - -
Amo05g2766 360 MobiDBLite consensus disorder prediction 157 188 - -
Amo05g2766 360 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 236 293 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2766 Amo-Chr5 69153389 69154856 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2766 44 311 ZF-HD Transcription Factor Family AT2G02540 35.943 2.43e-51 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Amo05g2766 ZF-HD_dimer 1.5e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2766 - - ahf:112803563 518.464
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2766 05 69153389 69154856 Amo15g0604 15 38448511 38449979 hybridization