Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2719 ATGGCCTTTTCACCCACTGAAGAAGGATCAATTACTACATTCACCAATCCAACACTAGGCGATGAACAATTTAATGTGGATGAATTAGACATTCAAGAACAAGTAGGGTACAATTTCGACGAAATTACCGATGTCGTTGTGACTAGAAAGGATGAGCTGGACGATGGAGGCCAGTTGCCGGATCATAGTGGCGTAGGTGAAGAGGAAATTCCAGTCGTAGGTATGAGTTTTGGTTCGTTGCCTCTCGCACAGAAATTTTATGCAAACTATACAAAGAAAGTTGGGTTCGTTACTAAAATCAGGAACACGAATTTTGACAAGACGCGGAAGGAATCAAAGGTACCGGTTAATCAATCTATTTACTGCACGCGTGAAGGTTATCGAGAGTCTAGGGTGAACGCAGCAACTCGAGCAAATAGAATTACAGCCACGAGATGCAAAGCAACGAATCCAAGGATGTATGTCGTGCTGGACAATGAGAATGAATGTTGGGTTGTGTCTAGATTAGAACTGAGGCATTCTCACCCTTGTTCGGCTGAGAAAGCTGTCCATTATCATGAGTACCGGGAGCTGACCATGCATGCTAAAAATGTAGCTGATTTTTCTATCGATGGCGACAGTGGATACCTTTACGCGAATCGACGGAAGTGGGTTCCAATATTTTTCAAGAGTGAATTTTGGGCAGGCATGAGGAGTACACAGCGTAGTGAAAGTATGCACGCGTTTTATGGTGGATATCTGCATTGCAAGAGTGGGTTAGTTCAGTTCGTCCATGAATACGACAATGTCCTCGGAACCAAGGAGCGAAAGGAGCTGGAAGATGATGCTGCAGACTCGAAAGTCTACCATAGTTTTAGGGTCGACTATGACCCTTTGAGTCAAAAGGGTCAGTGCGAGTGCAACAAGTTTGAATCCGCTGGTATATTGTGTTGCCACACCCTTGCGGTCTGGTCATACTACAGAGTTGACYTAAATGTCATCCGCAAGCACACTTATGTCAAGAGTAGCCATGACGTGGCTCGGAGTGATGAAAGCAACAACTTGTTCAGGCATCTGTGTTCAGAGTTCTATAACGTTGCACAGAAGTTTGTTGCTTGTGATGAGGAAGCAGCCATCTTGCGAGCTGCCCTTTCGGATGCAAAGTCCAAGCTGATTGATTACCGTGCCAGCATGCGTTCCACTACTGCTGCTACGTCTCAGAATACCGTGCCCACACAGAGCACAAGCGGTGCGATTGTACATGACATTCAGGGACCCTCAAGAGTCAAAACCAAAGGACGACCTAAGGGTAAGAGACTTGGAGCAGAGTTGGACAAGTCAATTAAGAAATCAATGCAAAAATGGAATAGGAAATCTCACCTGGATGAGGTTGACCTCCCGTCAGATAATGATCGTTATGGGTATCTTAGTAAAAGATTTGAGGATTCTACTATGTGGAACTCAACGGAAGGTGGCGGATTCATGCACCTGTTGAACTCTTTTAGGCATATATAG 1494 0.4491 MAFSPTEEGSITTFTNPTLGDEQFNVDELDIQEQVGYNFDEITDVVVTRKDELDDGGQLPDHSGVGEEEIPVVGMSFGSLPLAQKFYANYTKKVGFVTKIRNTNFDKTRKESKVPVNQSIYCTREGYRESRVNAATRANRITATRCKATNPRMYVVLDNENECWVVSRLELRHSHPCSAEKAVHYHEYRELTMHAKNVADFSIDGDSGYLYANRRKWVPIFFKSEFWAGMRSTQRSESMHAFYGGYLHCKSGLVQFVHEYDNVLGTKERKELEDDAADSKVYHSFRVDYDPLSQKGQCECNKFESAGILCCHTLAVWSYYRVDLNVIRKHTYVKSSHDVARSDESNNLFRHLCSEFYNVAQKFVACDEEAAILRAALSDAKSKLIDYRASMRSTTAATSQNTVPTQSTSGAIVHDIQGPSRVKTKGRPKGKRLGAELDKSIKKSMQKWNRKSHLDEVDLPSDNDRYGYLSKRFEDSTMWNSTEGGGFMHLLNSFRHI* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2719 497 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 72 194 IPR031052 GO:0006355
Amo05g2719 497 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 210 278 IPR031052 GO:0006355
Amo05g2719 497 PANTHER OS06G0517100 PROTEIN 72 194 - -
Amo05g2719 497 PANTHER OS06G0517100 PROTEIN 210 278 - -
Amo05g2719 497 MobiDBLite consensus disorder prediction 396 414 - -
Amo05g2719 497 Pfam FAR1 DNA-binding domain 85 177 IPR004330 -
Amo05g2719 497 SMART 26again6 296 323 IPR006564 GO:0008270
Amo05g2719 497 MobiDBLite consensus disorder prediction 396 432 - -
Amo05g2719 497 ProSiteProfiles Zinc finger SWIM-type profile. 285 321 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2719 Amo-Chr5 65079614 65085193 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g2719 FAR1 5.2e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2719 - - ahf:112756742 523.087