Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2683 CCAACCATTACAATTTACAACTTTCTATCTTCCACCACCACTTCACTTACATTGATCAAAGTGATGATGGGAAGAACAGGAAGCAGTGATGAAAGTGGATTGAAGAAGGGGCCATGGACACCAGAAGAGGACAAGATATTGGTTGATTACATTCAGAGACATGGCCATGGAAGTTGGAGAGCCCTTCCAAAGCTTGCTGGATTGAACAGATGCGGCAAGAGTTGCAGATTAAGGTGGACTAATTACCTCAGACCTGATATCAAACGTGGAAAGTTCTCTGATGAAGAAGAACAACTCATCATCAACTTGCATGCAGTTCTTGGCAACAAGTGGGCAGCAATAGCAAGTCATTTGCCAGGGAGAACAGATAATGAAATAAAGAATTTCTGGAACACACATTTGAAAAAGAAGCTTCTTCAAATGGGATTAGATCCAATGACACACCGTCCAAGAACAGATCACCTTAATCTCCTTACCAATCTGCAACACATTCTTGCTGCTGCTAACATTGTCACCACTTTCACAAACCCTAATCATCAAATCAACACTGCTCTAAGCCTTCAAAACATGCTTCAACCCATGCCTCCTGCACCCTCAAATTTACTCAATAATCTTGGATCATCTTTCTCATCATTATCACTGCCAGATACTCTTCTTTATGAAGGTTTAGGGTTGAATGTAAATGACCATTCTACCCTTCATAACATTATTTATAATGCTTCAAATTCAGCTGCTTCTTCCTCTCAGAATCAGTTCCAAAACTTTGATCAACAACAGATGATGATGACGATGATGAATGGTAGCAGAAACAATAATAATAGCAGTAATTGCAGTGAGTCTCAGAATTTTGACGAACAATTTGGTTCAACAAATGCTACTACTACAGTCACACCATCAAGTTCACTTCCAAATCTGGTTTCAGTTTCAGCCTCACCTGAACGTTCTTCTTCTTCTCCAACCAAGAATAATAATAATAATATTATTAACAGTAATTCCACCTTTGAAATTTGGGGAGATTTCATGGATGTGGATCCAAATGATGCGTATTGGAAAGATTTCATTGAGTAA 1068 0.3886 PTITIYNFLSSTTTSLTLIKVMMGRTGSSDESGLKKGPWTPEEDKILVDYIQRHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSDEEEQLIINLHAVLGNKWAAIASHLPGRTDNEIKNFWNTHLKKKLLQMGLDPMTHRPRTDHLNLLTNLQHILAAANIVTTFTNPNHQINTALSLQNMLQPMPPAPSNLLNNLGSSFSSLSLPDTLLYEGLGLNVNDHSTLHNIIYNASNSAASSSQNQFQNFDQQQMMMTMMNGSRNNNNSSNCSESQNFDEQFGSTNATTTVTPSSSLPNLVSVSASPERSSSSPTKNNNNNIINSNSTFEIWGDFMDVDPNDAYWKDFIE* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2683 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 83 IPR017930 -
Amo05g2683 355 ProSiteProfiles Myb-like domain profile. 31 83 IPR001005 -
Amo05g2683 355 Gene3D - 91 138 - -
Amo05g2683 355 SMART sant 88 136 IPR001005 -
Amo05g2683 355 SMART sant 35 85 IPR001005 -
Amo05g2683 355 MobiDBLite consensus disorder prediction 266 329 - -
Amo05g2683 355 Gene3D - 35 88 - -
Amo05g2683 355 ProSiteProfiles Myb-like domain profile. 84 134 IPR001005 -
Amo05g2683 355 CDD SANT 91 134 IPR001005 -
Amo05g2683 355 CDD SANT 38 83 IPR001005 -
Amo05g2683 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 84 138 IPR017930 -
Amo05g2683 355 PANTHER MYB TRANSCRIPTION FACTOR 25 355 - -
Amo05g2683 355 SUPERFAMILY Homeodomain-like 33 130 IPR009057 -
Amo05g2683 355 Pfam Myb-like DNA-binding domain 89 134 IPR001005 -
Amo05g2683 355 Pfam Myb-like DNA-binding domain 36 83 IPR001005 -
Amo05g2683 355 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 25 355 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2683 Amo-Chr5 63020268 63022262 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2683 23 355 MYB Transcription Factor Family AT5G16770 46.944 4.35e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g2683 Myb_DNA-binding 9.7e-17 CL0123