Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2677 ATGCTTTCCTTTTTAAATGCCTTTTATTATTGTTCATTCATGCAGCTATCAGAAGAAACCTTCTCAAGTGGAAAAGTTGGTGGTTGTAGAATATACACAACCATTAATTTAGGCAGTACTATAGTGGGCAGGACTAGAAGTGTAAACCAAAATGAACACTTTAATTTTCAGTGGCATCAATCTTTAAGAATTTACACTGCTCATATTGCAAGTGAAGTTGTTTTTCATATCAAAGAAGACGACACAATAATTGGTGCAAAAGTGATTGGAAGAGCATATTTTCCTGTGGAAGAGTTGGTAAATGGAGAAAATAAGGATAGATGGCTCCAAATCTTGAATAAAAAACATAAACCTCTTAAAGCAAGGCCTAGAATCCATGTGAAATTACAGTTTTTTAATGTCACAAAGGACATTAACTGGTCTCAAGGGATCAAAAGTCTTGATTTTGCAGGGCTCACTCATTCATACTTTCCTCAGAGAAGTGGTTGTAGGGTCACACTTTACCAAGACACTCACATACCAACCACATTTTTTCCTGAAATCTTGCTAACTAAGGGTAGGTACTATGAACTGCATCAATGTTGGGAAGACATCTTTGATGCCATTTCGAAGGCGAAACAGTTGATTTACATAGCAGGATGGTCTCTTTGCACCAAAATCACCTTGGTTAGGGAATCAACTTGCAAGAAACAAGAAAGTAGTGATTTGAATTTGACACTTGGTGAGCTTCTTAAAAAGAAGGCCAGTGAAGGTGTTAAGGTCCTTATGCTCATTTGGGATGACAGAACTTCAATTAAGTGGCTAAGGAATGATGGAGTTATGACAACTCATGATGAAGACACAGAAAGTTATTTTGATGGAACTGGAGTGCACTGTGTTTTATGTCCTAGAAATCCTGACAAAGGGGAAAGCCTTATCCAAGGCACAGAGGTTGCTACCATGTTTACACATCATCAAAAGATCATAATCGTCGATAGTGATGTGCCAAATGAAAAATCAGATAGTAGGAGAAGAATTTTGAGTTTCATTGGTGGTATTGATCTATGTGATGGGAGATATGACACACCTTTCCATTCCATCTTTGGTAGCTTAGGAACAGTTCATCATAATGATTTTCGCCAGCCAAACTTCGAAGGAGCCTCGATCGATAAAGGCGGACCGAGAGAGCCTTGGCATGACATACATTGTCGCCTAGAAGGACCAATTGCAAGGGATGTTTTAAAGAATTTTGAGCAAAGGTGGAGAAAACAAGGTAAGAAGGATGTTTGTCTTGTTGAAATCGACTCGCTTGTTGACACTTTTGTTCCCTCATCACTAGATAAATTCCCTGAAGATGATGAAGAAATATGGAATGTTCAGTTATTTCGATCAATTGATGGAGGAGCAGCTTTGGGCCTCCCAAATTCTGAAGAAGAAGTAGCAAGCATCCAAAATGCTTATATTACTGCTATCAGGAGAGCCAAGAGTTTTATCTATATAGAAAATCAGTATTTTATGGGAAGCTCTTTTGGCTGGAATTCTGGCAACCTTCAAGTTCAGGAGGTGGGAGCTTTGCATCTTATTCCGAAGGAATTGTCTCTCAAGATTGTCAGCAAGATTGAAGCAGGAGAAAGGTTTAGTGTATATGTAGTGATTCCAATGTGGCCAGAGGGTATTCCTGAGAGTAACTCAGTTCAAAGCATGTTGAGTTGGCAGAAGGAGACAATGGATATGATGTACATTGATATAATCCAAGCTCTACGTGCCAAAGGGATTACTGCTGACCCAAAAGACTATTTGAGTTTCTTTTGCCTTGCAAATCGTGAAAAGAAGAATGATGGAGAATATAAACCTTCTAAACACCCACAATATGACTCAGATTATAACAGAGCTCAACAAGCAAGGAGATTCATGATCTATGTACATGCTAAAATGATGATAGTTGATGATGAATACATAATTATTGGATCTGCCAATATCAATCAACGATCCATGGATGGAGCTAGAGATACAGAGATTGCCATGGGAGCTTATCAACCATATCACATAAAAAGAAATGAGCCAAACAGGGGCCAGATACATGGCTTTAGAATGGCCTTGTGGTACGAGCACTTGGGTTTTCTAGATGGCTCTTTTCTTGTTCCACAGAGTTTGGAGTGTGTCAGACTTATAAACAATATTTCAACAAGGTATTGGGACCTTTACTGTAGCGAAACCCTTGATGAAGACTTGCCTGGACATTTGCTTAGTTATCCCATTAAAGTAACAGAAAGTGGTAATGTCACAACGCATCTTGGTGTAGAGCACTTTCCGGACACAAAGGCACGAATTCTTGGGTCCAAATCGGAACTTCCTTTTCTCTTAACTACTTAA 2352 0.389 MLSFLNAFYYCSFMQLSEETFSSGKVGGCRIYTTINLGSTIVGRTRSVNQNEHFNFQWHQSLRIYTAHIASEVVFHIKEDDTIIGAKVIGRAYFPVEELVNGENKDRWLQILNKKHKPLKARPRIHVKLQFFNVTKDINWSQGIKSLDFAGLTHSYFPQRSGCRVTLYQDTHIPTTFFPEILLTKGRYYELHQCWEDIFDAISKAKQLIYIAGWSLCTKITLVRESTCKKQESSDLNLTLGELLKKKASEGVKVLMLIWDDRTSIKWLRNDGVMTTHDEDTESYFDGTGVHCVLCPRNPDKGESLIQGTEVATMFTHHQKIIIVDSDVPNEKSDSRRRILSFIGGIDLCDGRYDTPFHSIFGSLGTVHHNDFRQPNFEGASIDKGGPREPWHDIHCRLEGPIARDVLKNFEQRWRKQGKKDVCLVEIDSLVDTFVPSSLDKFPEDDEEIWNVQLFRSIDGGAALGLPNSEEEVASIQNAYITAIRRAKSFIYIENQYFMGSSFGWNSGNLQVQEVGALHLIPKELSLKIVSKIEAGERFSVYVVIPMWPEGIPESNSVQSMLSWQKETMDMMYIDIIQALRAKGITADPKDYLSFFCLANREKKNDGEYKPSKHPQYDSDYNRAQQARRFMIYVHAKMMIVDDEYIIIGSANINQRSMDGARDTEIAMGAYQPYHIKRNEPNRGQIHGFRMALWYEHLGFLDGSFLVPQSLECVRLINNISTRYWDLYCSETLDEDLPGHLLSYPIKVTESGNVTTHLGVEHFPDTKARILGSKSELPFLLTT* 784
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2677 783 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 630 657 IPR001736 GO:0003824
Amo05g2677 783 Gene3D Endonuclease Chain A 441 678 - -
Amo05g2677 783 SMART pld_4 313 352 IPR001736 GO:0003824
Amo05g2677 783 SMART pld_4 630 657 IPR001736 GO:0003824
Amo05g2677 783 Gene3D C2 domain 15 143 IPR035892 -
Amo05g2677 783 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 313 352 IPR001736 GO:0003824
Amo05g2677 783 PANTHER PHOSPHOLIPASE D 15 783 IPR015679 -
Amo05g2677 783 Pfam Phospholipase D Active site motif 631 657 IPR001736 GO:0003824
Amo05g2677 783 Pfam Phospholipase D Active site motif 313 352 IPR001736 GO:0003824
Amo05g2677 783 PIRSF PLD_plant 5 783 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Amo05g2677 783 Pfam C2 domain 29 110 IPR000008 -
Amo05g2677 783 SUPERFAMILY Phospholipase D/nuclease 439 713 - -
Amo05g2677 783 Pfam Phospholipase D C terminal 704 774 IPR024632 -
Amo05g2677 783 PANTHER PHOSPHOLIPASE D 15 783 - -
Amo05g2677 783 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 26 134 IPR035892 -
Amo05g2677 783 Gene3D Endonuclease Chain A 184 429 - -
Amo05g2677 783 SUPERFAMILY Phospholipase D/nuclease 135 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2677 Amo-Chr5 62932289 62936379 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2677 18 783 Phospholipase D Gene Family (Wang group) AT3G15730 61.460 0.0 1013
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2677 K01115 - qsu:111988169 1060.83