Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2667 ATGCATAACCATAATAATGACAATGGAAGAGGAACAACAACTTCAAGCTTATTTCCATTTCATCATCAGTTTATGAGGGATAGCCGTTCTAGAAATTTTCAAGAACACCCCTGTAATAATAAAGATTCTGATTATGATTCCAGGGAGGATGGCAATGAAAAATTCCACAACCATGAAGAAGAAGCAGCAGCAGCAGCAACTAATGAGTTCAATGATGATGAAGAGAACCCTAATGAGGAGAAGTATTGCATGATGAGTAGTGGGAAAGAGGTAAATAACAGTGAAAAGTCCAAAGTGTGTGCAAGAGGGCATTGGAGGCCTTCAGAAGATTCCAAGCTGAAGGAGCTTGTGGCTCTTCATGGCCCTCAGAACTGGAACCTCATTGCTCAGAATCTAGAAGGAAGATCAGGTTTGAATTTTCTACTCAAATAA 432 0.3981 MHNHNNDNGRGTTTSSLFPFHHQFMRDSRSRNFQEHPCNNKDSDYDSREDGNEKFHNHEEEAAAAATNEFNDDEENPNEEKYCMMSSGKEVNNSEKSKVCARGHWRPSEDSKLKELVALHGPQNWNLIAQNLEGRSGLNFLLK* 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2667 143 CDD SANT 105 137 IPR001005 -
Amo05g2667 143 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 97 143 IPR017930 -
Amo05g2667 143 Pfam Myb-like DNA-binding domain 102 137 IPR001005 -
Amo05g2667 143 Gene3D - 93 142 - -
Amo05g2667 143 MobiDBLite consensus disorder prediction 28 65 - -
Amo05g2667 143 ProSiteProfiles Myb-like domain profile. 102 143 IPR001005 -
Amo05g2667 143 PANTHER MYB TRANSCRIPTION FACTOR 22 137 - -
Amo05g2667 143 SUPERFAMILY Homeodomain-like 100 138 IPR009057 -
Amo05g2667 143 PANTHER MYB PROTEIN-RELATED 22 137 - -
Amo05g2667 143 MobiDBLite consensus disorder prediction 28 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2667 Amo-Chr5 62005292 62005723 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2667 56 143 MYB Transcription Factor Family AT5G17800 47.727 1.13e-17 75.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g2667 Myb_DNA-binding 8.3e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2667 K09422 - gmx:100789305 102.064