Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2635 AATGTTAACTCAAAATTTCCTTGTTTTCTCCTGTCTCATTGTATCTACTATTTGAGGACTGAATTCTGTGGCTATGGTTCTCGCTGCAGTTTCAATCATCCGCATGACCATGAGGCAGAAGCTTGGAGTATTGAGGCTAAGATCTTGACCATTTGGGAAGATGCTAGCATTGTTAATGAAAATATGCAGAAACTCTTACATGTGGTCTTCATGGATAAGCATCACGACAAGGTTCAAGCAATTGTTGAGGATGATTTGATCACAACTTTTATTTATCAGTTAAAAGAAGGACACGTATTCATTATTTCTGACTTCAAAGTGATACCTAATGGTGGATTGGTTAAGGTTACAAGACATCGGTTCCTCACCCTTTTCAAGTGTAGTACCTCTGTTGTTGCAGCTGCAAGTATTGTCATACCTAATCCTGGTTTAAGTCTAACTTCTATGGACGAGATTCTTCAAAAGTGCACTGATTATGAGTACTTAATAGATATCAATAGTTTGAAAAAGTATCAGAGACCACCCGTTCTTATTTTACAATCTTTCAAGATCAAAGTCAATGGAGATAAAGTTAGTCTCCAAAATGTGATCAATGTTTCTCGGGTTTCAATCAACCCTGATATGCAGGAAACTATGGATTTTCTGAATGAGTTAGTTGGATTCAATTCTCCTCAAATTTTGTCCCACTAA 690 0.3681 NVNSKFPCFLLSHCIYYLRTEFCGYGSRCSFNHPHDHEAEAWSIEAKILTIWEDASIVNENMQKLLHVVFMDKHHDKVQAIVEDDLITTFIYQLKEGHVFIISDFKVIPNGGLVKVTRHRFLTLFKCSTSVVAAASIVIPNPGLSLTSMDEILQKCTDYEYLIDINSLKKYQRPPVLILQSFKIKVNGDKVSLQNVINVSRVSINPDMQETMDFLNELVGFNSPQILSH* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2635 229 SUPERFAMILY CCCH zinc finger 11 36 IPR036855 GO:0046872
Amo05g2635 229 SUPERFAMILY Nucleic acid-binding proteins 42 134 IPR012340 -
Amo05g2635 229 CDD RPA1_DBD_A_like 43 131 - -
Amo05g2635 229 Gene3D - 35 135 IPR012340 -
Amo05g2635 229 Pfam Domain of unknown function DUF223 68 162 IPR003871 -
Amo05g2635 229 ProSiteProfiles Zinc finger C3H1-type profile. 13 36 IPR000571 GO:0046872
Amo05g2635 229 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 14 34 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2635 Amo-Chr5 60133075 60136599 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2635 14 36 C2H2 Transcription Factor Family AT5G18550 78.261 2.88e-07 48.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Amo05g2635 DUF223 1.2e-08 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2635 - - ahf:112726667 276.944