Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2597 ATGTACTTTATTTGTACTTTACCTATCTGCATTACTTGTTCCCATTCCTCTCTGAAATTGAAAGAAAAAATCAAGCTCTACCCACCCATTGACCCAGCCCCGCCACCCGCAGGCCGTAGCCATGCCAACCACCGTAGCCACCTCAACCCTGCAGTCCCGTCGCATGTACAGGCATTGCGTGTGGAAGATTGGCGCCATTGCAGGAGCTTGAAGTTGTCTCCTCTGTTCGAGAGTGCTCTCTCTATCTGGAACCTTCCCTCGCCGCTGACATTTCCGTTCGTTCTATTCGCGCTTCAGACACCTTTGAAACATGATAAAGCTATTGGAATAATCCACTCTAGGATGGATTTGAATCTTAACAAAGTGGGGTGCATTCAGTTATCAATTGAAGTCTTAAAGCACAAAGAAGCTAGTCAACCGAATTGGGAGCATAAAAGTGTTGCTGTATTTAATGTGTATGTTGATTTTCGAGAGATAAAGCCATCAGATGGTGATTTTTTTGGAACAGACTCCGATGAAGAGTTCCCAAGAAGAGACAATCTAGATTTTTTAGATGACGATTCGGAGGCTGATAAAGATAGACCTCAAGATAAGAGAATAGCAGAGCTGTCACAGGAAGATATCATGCAACTTCAGTTTACAGATGAGGAAGCTGTTTATCGATTCTACAAGACTTATGCAATGATGCACGGTTTCGCTGTGAGGTTGGATGAAGTCAGACGCGATAGCGATGGTTGCGTAATTATGTGCCAAATTATTTGCAATCGGGCGGGCTCAAGAAAGGAAGAGGTTGAAAAGGAAAGAATCTGGGACCACCGACCCCTAACTCGAAGTTTTTGTCGGGCGAGAATTCGTGCAAGAATAGATAGAAAAATTCATAAATGGAAGGTTGTTTCGTTGTATGAAGAGCACTCTCATGGATTAGTTGATCCACTCGACATTAGCATGATGCGTGAGTATTACACATTCAGTGTCTCGGATAAAGCTCAGGCGAAGAATTTACACGCCATAGGCATCAGGACCTGTCACATCTTGAGATACTTGGCTTCTCAAAAAGATATCCTTCTTGAATTCATCAATAACATGGAGACCGTTGTTAGCCATTATAGGAACAATGCAAGAGTTGCAGAGTTTAATAGTAAATATACCGATCCAGTACTTGTGACTTCTTTGCCGACACTTGAAGATTTTGCTGCAAAAATTTTCACTCGTAACATGTTCCAGGAGGTCAGGAAGAAAATTGAGGGTGCTTGTGCTATGAATACAGAGTTGGTAATTCAGGATGGTGGAAAACTATATTTCAAGTGTAACAATTTTGGAGTGCCAGAGATTGATCATGTGGTTGAGTTTGACATAGTTGGAAGGATGCTTCGTTGTGAGTGTCTGTGGTTTGAAAATAGAGAGATTCCTTGCATGCACATATTCGCATGCCTAAAGCACCAACACATTGAAGTTATTCCAGAACGCTTAGTGTGCAAACGTTGGACGAAGAATGCCAAGAGTGATTTTATGAAGTCAAACATTGATGATCCAAATGATTCTGATAAGGTACTAAAGTGTCGTTTGGGTGTGTTGGGTGCTGAGTGTTCTAGGTTGATAGATGTTGCATGTAAGAACTCAAGTGATTTTGTTGAAGCAATGAATGATGTTGTCAACACAATTACAAAAACTCAAAATCGAGGTGAAAATTCACGCAACGGTAATTTAGACGATGACTACGTTGTTGATCCATTGGTGGTGAAGAGTAAGGGAGCTCCCAAGAAAAACTCAAAATTTAAGCAACATAGAAGGTGTTCGAACTGTAGTGTGACAGGGCACTACAACAAAAGTTGTCCTAATGTTTCTGGTAGAATCCCAAAGGAGCCGATAGACGATGATACATAA 1884 0.4161 MYFICTLPICITCSHSSLKLKEKIKLYPPIDPAPPPAGRSHANHRSHLNPAVPSHVQALRVEDWRHCRSLKLSPLFESALSIWNLPSPLTFPFVLFALQTPLKHDKAIGIIHSRMDLNLNKVGCIQLSIEVLKHKEASQPNWEHKSVAVFNVYVDFREIKPSDGDFFGTDSDEEFPRRDNLDFLDDDSEADKDRPQDKRIAELSQEDIMQLQFTDEEAVYRFYKTYAMMHGFAVRLDEVRRDSDGCVIMCQIICNRAGSRKEEVEKERIWDHRPLTRSFCRARIRARIDRKIHKWKVVSLYEEHSHGLVDPLDISMMREYYTFSVSDKAQAKNLHAIGIRTCHILRYLASQKDILLEFINNMETVVSHYRNNARVAEFNSKYTDPVLVTSLPTLEDFAAKIFTRNMFQEVRKKIEGACAMNTELVIQDGGKLYFKCNNFGVPEIDHVVEFDIVGRMLRCECLWFENREIPCMHIFACLKHQHIEVIPERLVCKRWTKNAKSDFMKSNIDDPNDSDKVLKCRLGVLGAECSRLIDVACKNSSDFVEAMNDVVNTITKTQNRGENSRNGNLDDDYVVDPLVVKSKGAPKKNSKFKQHRRCSNCSVTGHYNKSCPNVSGRIPKEPIDDDT* 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2597 627 ProSiteProfiles Zinc finger CCHC-type profile. 596 613 IPR001878 GO:0003676|GO:0008270
Amo05g2597 627 ProSiteProfiles Zinc finger SWIM-type profile. 450 482 IPR007527 GO:0008270
Amo05g2597 627 SUPERFAMILY Retrovirus zinc finger-like domains 584 619 IPR036875 GO:0003676|GO:0008270
Amo05g2597 627 Pfam FAR1 DNA-binding domain 221 309 IPR004330 -
Amo05g2597 627 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 194 313 IPR031052 GO:0006355
Amo05g2597 627 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 320 556 IPR031052 GO:0006355
Amo05g2597 627 MobiDBLite consensus disorder prediction 165 196 - -
Amo05g2597 627 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 194 313 - -
Amo05g2597 627 PANTHER PROTEIN FAR1-RELATED SEQUENCE 12-RELATED 320 556 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2597 Amo-Chr5 59347559 59354334 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g2597 FAR1 3.9e-15 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2597 - - aip:107641230 510.76