Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2551 ATGGCGATTCATCAACAACGTGAACACACTAGTGTTGTCAGTTTCTTCAAGATCATTTGTCGTTGGCATATTCTAGATGAGAAGATTAAGCTTCCAACGGAATTCACAAACAAGTGTGGATTGAAACTACCAAATCCAGTTATTCTGAAAGTTGTAGATGGCAACCAAAAGAAAGTGCATTGGACCAAAATTAATGGTTCCATTTGGTTTATTGGGAAGGAATGGAAAGAGTTTCTTGAGAACTACTCTGTCTCACACGGCCACCTTTTGTTGTTCAAATATTGTCTTGTGGCTTCATGTTTTGGGGTCCAAATATTTGACAGCACCACTCTTGAAATTGACTACCCTTACCATGAACTCAACTATGATGATTATGAAGATTATTATGAGGATGATGATGATGAAGATGTTGTTGATGTTGTGAAGCTTCAATATGATCAATATCAATTGAAAGATAAAAGTGAGAGTATTGCTGATGCTATAAGAAGTGACAGACTAGAGAGAAAAGATAGCAACCCCAGTTTCGAGGTTGTCATGCAGGATTCATATATCAATGGGGGAAGATGCATGGCCGTACCATCTAATTTTGCAAGGGAGTACATGAAAGAAGGAGGATACCTACTAAGAGTGGCGGATGGGAGGACATGGAAAGTGATGTACAAGACTTGGAGTGGAGATGGGATGCCTTGCAAGAAGTGCAAACTGCAAAAGGGTTGGGCCAAGTTTAGCCAAGGAAACAAGTTAGAGAAGGATGATGTCTGTGTCTTTGAGCTGGTTAATAACAATTGCAATGGTAGTTGCTCCACCATCATACCAACCTTCAATGTTCTAATCCACCGTAACCACATCGGTAGCAGTTATTGA 864 0.3993 MAIHQQREHTSVVSFFKIICRWHILDEKIKLPTEFTNKCGLKLPNPVILKVVDGNQKKVHWTKINGSIWFIGKEWKEFLENYSVSHGHLLLFKYCLVASCFGVQIFDSTTLEIDYPYHELNYDDYEDYYEDDDDEDVVDVVKLQYDQYQLKDKSESIADAIRSDRLERKDSNPSFEVVMQDSYINGGRCMAVPSNFAREYMKEGGYLLRVADGRTWKVMYKTWSGDGMPCKKCKLQKGWAKFSQGNKLEKDDVCVFELVNNNCNGSCSTIIPTFNVLIHRNHIGSSY* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2551 287 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 8 151 - -
Amo05g2551 287 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 160 281 - -
Amo05g2551 287 SUPERFAMILY DNA-binding pseudobarrel domain 170 263 IPR015300 -
Amo05g2551 287 CDD B3_DNA 173 280 IPR003340 GO:0003677
Amo05g2551 287 Pfam B3 DNA binding domain 175 264 IPR003340 GO:0003677
Amo05g2551 287 Gene3D - 7 110 IPR015300 -
Amo05g2551 287 PANTHER B3 DOMAIN-CONTAINING 8 151 - -
Amo05g2551 287 PANTHER B3 DOMAIN-CONTAINING 160 281 - -
Amo05g2551 287 ProSiteProfiles B3 DNA-binding domain profile. 175 275 IPR003340 GO:0003677
Amo05g2551 287 Gene3D - 151 282 IPR015300 -
Amo05g2551 287 SMART B3_2 15 109 IPR003340 GO:0003677
Amo05g2551 287 SMART B3_2 175 270 IPR003340 GO:0003677
Amo05g2551 287 CDD B3_DNA 14 107 IPR003340 GO:0003677
Amo05g2551 287 SUPERFAMILY DNA-binding pseudobarrel domain 10 108 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2551 Amo-Chr5 57382938 57385248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2551 11 143 B3 DNA Binding Superfamily AT1G49475 35.417 7.31e-17 75.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Amo05g2551 B3 5.3e-15 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2551 - - ahf:112784208 450.284