Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2550 ATGGAGGGTAGTAGAAGAAGCTCAAATTCTGAACTCCCGCCTGGGTTTCGGTTTCACCCAACTGATGAAGAACTAATCGTTCACTACCTTTGTAACCAAGCCACTTCAAAGCCTTGCCCTGCTTCCGTCATCCCTGAAGTTGATATCTATAAGTTTGATCCATGGGAATTACCCGATAAAACAAGCTTTGGAGAGAACGAATGGTACTTCTTTAGCCCAAGGGATAGGAAGTACCCAAATGGGGTGAGGCCTAATAGGGCAACGGTTTCAGGGTATTGGAAGGCCACTGGTACGGACAAAGCAATCTATAGTGGGTCTAAGCATGTTGGGGTCAAGAAAGCTTTGGTCTTTTACAAGGGTAGGCCCCCAAAGGGTATCAAGACTGATTGGATCATGCATGAGTATAGATTGGTTGGATCAAGAAGGCAACCCACTAAACAAATTGGATCCATGAGGCTAGATGACTGGGTGTTATGCAGGATCTACAAGAAGAGGAGCATAGCAAAATCAATGTTGGAGCCTAAAGAGGAATTCCCAACAATGCCCCAAATCAATCATCATCTAACATCATCATCAAATGATGGGAATGATAATAATGATGATGAGCAAGAAATGATGATGAAATTCCCAAGGACATGTTCCCTTACACATCTCTTGGAAATGGACTACTTGGGCCCAATATCACAAATACTCTCTGATGGATCATATAACTCAACCTTTGATTTTCAACTAAACAGTGCCAATGTTGGCAACATGATTATGGACCCTTTTGTGAAACAACCTCAGATCCTTGAAATCCCTAACAAAAATAATCATAACAATCCTTATTATGATGTGGATTCAGGGAAGAACAACCTAGTGAAACAGAATAGCACCATAAACCCTACTATATTTGTGAACCAATTCTTTGATCATAGTGGTAGTTAA 927 0.4121 MEGSRRSSNSELPPGFRFHPTDEELIVHYLCNQATSKPCPASVIPEVDIYKFDPWELPDKTSFGENEWYFFSPRDRKYPNGVRPNRATVSGYWKATGTDKAIYSGSKHVGVKKALVFYKGRPPKGIKTDWIMHEYRLVGSRRQPTKQIGSMRLDDWVLCRIYKKRSIAKSMLEPKEEFPTMPQINHHLTSSSNDGNDNNDDEQEMMMKFPRTCSLTHLLEMDYLGPISQILSDGSYNSTFDFQLNSANVGNMIMDPFVKQPQILEIPNKNNHNNPYYDVDSGKNNLVKQNSTINPTIFVNQFFDHSGS* 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2550 308 ProSiteProfiles NAC domain profile. 12 164 IPR003441 GO:0003677|GO:0006355
Amo05g2550 308 Gene3D NAC domain 21 168 IPR036093 GO:0003677|GO:0006355
Amo05g2550 308 Pfam No apical meristem (NAM) protein 13 137 IPR003441 GO:0003677|GO:0006355
Amo05g2550 308 PANTHER NAC TRANSCRIPTION FACTOR 56 9 253 - -
Amo05g2550 308 SUPERFAMILY NAC domain 10 164 IPR036093 GO:0003677|GO:0006355
Amo05g2550 308 MobiDBLite consensus disorder prediction 178 202 - -
Amo05g2550 308 PANTHER BNAC06G30680D PROTEIN 9 253 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2550 Amo-Chr5 57353418 57355275 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2550 7 230 NAC Transcription Factor Family AT1G69490 71.239 1.54e-117 337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Amo05g2550 NAM 3.2e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2550 - - adu:107489303 629.017