Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2545 ATGGAACGTGACGGTGGCCATAAACAAACTTCTCACAAAACTCCGTACACTCAGCTTGAACAGGTTAGCTCTGATTTCTTTCTAGCAATTGGCCTGCAAGAGCAAAACGCAACAATATTCACAGCGCTCGCAGCGACACTGGAAAGCGAAGGATCCTCCTCGTCGCTTGATAATGAGCAGGAAGACGATGATAACGCTGATTTCTTCACGAGCTATGAGTTTGAAACGGAGGACCTTCAGTTTCTTGAAAGCGAAGGAAGCAACTACGGTGATGACGAAGACATGGATGACTTTGACTTCGACGTGGACGAATTGACATACGAAGAGTTAATTGAGTTGGAAGACTTTATAGGGAAGCAGAAGAGAGGGTTATCAGCAAATGAGGTTTCTTCGTGCTTGCATTCCTACACCTTCGATTCTGTTAACGAGAGGAAAAACAGTGGAACCGATCGGTGCGTGATTTGCCAGATTGAGTATGAAGAAGGTGAAGCGTTGGTGGCACTTCGTTGCGGACATCCTTTCCACACGGATTGCATAAGCAAGTGGCTTCAAGTTCAGAAAATCCTAACCTCCATCACGCCACCATCTATTTCACCGTCGCCACCCTTCACGCTCAAGATCGTAACCAGGTTTGTCGTTATGTTAGCTAGCTCACCATTCCTCTTGCTATTTTGCTTGTCATCCTTCTCGTCGTTCTGCTCGCCTCTCTCTCGCGGTTCTGCTCGCCGTGCTGCTCGAAAATATCCATATACAGACAACCCACAGGGTCTTCCTGAGAGAACAAATGGAGCTGCTGGCGAGTATGCTAGAGCATGCACTTCTGTGGCTGCAGAATGTGGAGTCCCTGTGATTGATCTCTTGGACCAAATGCAGCAGTGCCCCGACTAG 888 0.4786 MERDGGHKQTSHKTPYTQLEQVSSDFFLAIGLQEQNATIFTALAATLESEGSSSSLDNEQEDDDNADFFTSYEFETEDLQFLESEGSNYGDDEDMDDFDFDVDELTYEELIELEDFIGKQKRGLSANEVSSCLHSYTFDSVNERKNSGTDRCVICQIEYEEGEALVALRCGHPFHTDCISKWLQVQKILTSITPPSISPSPPFTLKIVTRFVVMLASSPFLLLFCLSSFSSFCSPLSRGSARRAARKYPYTDNPQGLPERTNGAAGEYARACTSVAAECGVPVIDLLDQMQQCPD* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2545 295 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED-LIKE 1 189 - -
Amo05g2545 295 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 1 189 IPR045191 GO:0061630
Amo05g2545 295 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 114 192 IPR013083 -
Amo05g2545 295 SUPERFAMILY RING/U-box 151 188 - -
Amo05g2545 295 Pfam Ring finger domain 151 186 IPR001841 -
Amo05g2545 295 ProSiteProfiles Zinc finger RING-type profile. 152 182 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2545 Amo-Chr5 57151721 57154137 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2545 99 188 C3H Transcription Factor Family AT3G63530 45.055 5.17e-21 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2545 K19045 - gmx:100777284 196.052