Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2538 ATGTTGGGAATGAATAACCATGTTGATCTGGTGGAGAAAATCACTCCCTGGAGAGAATCATGGAAAGTGCATGTTAAAGTTGTGAAGTTGTGGTACCACAAGAATCCTGGTTTGGATGCTTCACAAAATCTGTTGCATATGGTCTTAATGGATGAGAAGTTACACAAGATCCAAGCAACCATTAGAGATCAGCTTATATCAAAGTTTGCTTCCTCTTTACACGAAGGGGATCTGTATTTGATGAACCATTTTACAGTTGTACCAAACACTGGTATGAACAGAGTGACCACCCATCGTTTCAGACTTTTGTTCCAATACAAGACCTCTGTTGTTTCTATGGTATCTCCAAGGATTCCGTATTCCGGTTTGTGTTTGAGATCAATAGATGAAATTGATCAAATGACAACCGAGTACAATTTCCTTATTGACTTTGTTGGGATCATTACTGGTGTTCGAAAAGAAAGAGATGTAGCATCATATGGGAAGCTGCTCAAAGTAGTTGTGCTAGAAGTTTTCAGTCATGGCAAAAAGGTCCAATGCAATGTCTTTGGAGATGCTTGTGATCTCTTGGAGTATGATAAATTACAAAAATATCCAAGATCTCCGTTGATTGTGCTCGAGTCTTTTAAAATCAAAGCAATTGAAGGTGGAGTAGTTCTACAGAATGTGATCAATGTCTCTAGGTTATTTATTAATCCCGACATTCGTGAGTCTGTTGAGTTCCTAAGCAGATTTAGTGTGTCCAGTTATGGATTCTCAAGACTTGTGACCAATGATCTTGGATACTTAATTTCTAAAGTTAATGGTGATTATTTCAATCCCAAAGAAATCTGTGATATTCAAGATATTCATTTAGATAACGGGGGTGCTCATTACTTTGTTATTGGGACAATTAATGAAGTTATAGATGAACCAAATTGGTGGTACTACTCATGCGTGTGTGGTCATGCCGTTGTTGACCATGAGGATCTCTACCTTTGTGATGCTTGTGGTTCATGTGTTGAACATGTGTTGGTCAAATATAGGATTCGTGTAAAGATTCATCATCGTGGGTGTGCTGTTTTGTTTGTTTTGCTTGATAATGTGGCAACAAAACTACTTGGAAAAACGTGTGCTGAAGCATTTCTCGGGGTAGATGAAGAATTTCCTGTTGATCCTAGTGTGCTTGCAGTCTGTCGGTCATATTCTCCAGAAATGTTTGGTGTTGTTGTTGGAGAGGAGAAAGTTTTCAAGGTTCAAATTCTTTCTGGAGTTGATCCAGATTACTCCGGGTCCTTTAAAGTTGTAAATGTGTTTAGTAATAATCTGGAAGCAGCTGCAATCCATGATTATGTGAATGCAAGGCTTCACGATCCGATTTTTGCACCAATCTATGATGCCTATTTGCAGTACGCAACTGCGAAAGATTACAAGACTCAAGTAGTGTGTGATAATTCTATTCAATCAGAAACTATTGAAGATATTATTACTGATCTGATTTCACCCAATCGCTGCTATTCTGATGTTGAGAACGGTGGTTTCGTTTTTATTTTGGGAACTATATCATCTGTTTTCAAGAAACATAAGTGGTGGTTCTCAACTTGTTTGTGTGGTTCTCTTGTGTCAGCTAATAAACAAAGTTTATCATGTGATCTATGTCAGCTTCAATGTATTGATGCTGTCCCAAGATTCTGCTTGAAGATTGTAGTGTCTCATGCCAATGGGAACAATATTTTTGTTCTTAAAGATCGTGAGGTTGTGCAACTAATAAAGATTAAATGCTCGAGGTTCTTGGATAGTCACCCAGAGTTGAATCAGGTTCTCATCCTGCTGTGGCCTGTGGGTTATGAGATGAATCGATCTGTGTATATTGTTCAACAAATTTGGGATGATGCCTCTGTTATTAATGTTTTTGAGGCTGCTTCTGAGATGAATGATGATAAGATTCGTGTTTTGGTTGATTCTTTGCCTGAAGTTGAAGACGCTTTAAGCCAATGTGGAAGTGATCATGACGCTGTGGAGGATCTAGATGCCTTTTAG 2019 0.3834 MLGMNNHVDLVEKITPWRESWKVHVKVVKLWYHKNPGLDASQNLLHMVLMDEKLHKIQATIRDQLISKFASSLHEGDLYLMNHFTVVPNTGMNRVTTHRFRLLFQYKTSVVSMVSPRIPYSGLCLRSIDEIDQMTTEYNFLIDFVGIITGVRKERDVASYGKLLKVVVLEVFSHGKKVQCNVFGDACDLLEYDKLQKYPRSPLIVLESFKIKAIEGGVVLQNVINVSRLFINPDIRESVEFLSRFSVSSYGFSRLVTNDLGYLISKVNGDYFNPKEICDIQDIHLDNGGAHYFVIGTINEVIDEPNWWYYSCVCGHAVVDHEDLYLCDACGSCVEHVLVKYRIRVKIHHRGCAVLFVLLDNVATKLLGKTCAEAFLGVDEEFPVDPSVLAVCRSYSPEMFGVVVGEEKVFKVQILSGVDPDYSGSFKVVNVFSNNLEAAAIHDYVNARLHDPIFAPIYDAYLQYATAKDYKTQVVCDNSIQSETIEDIITDLISPNRCYSDVENGGFVFILGTISSVFKKHKWWFSTCLCGSLVSANKQSLSCDLCQLQCIDAVPRFCLKIVVSHANGNNIFVLKDREVVQLIKIKCSRFLDSHPELNQVLILLWPVGYEMNRSVYIVQQIWDDASVINVFEAASEMNDDKIRVLVDSLPEVEDALSQCGSDHDAVEDLDAF* 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2538 672 Pfam Domain of unknown function DUF223 47 112 IPR003871 -
Amo05g2538 672 SUPERFAMILY Nucleic acid-binding proteins 502 593 IPR012340 -
Amo05g2538 672 SUPERFAMILY Nucleic acid-binding proteins 126 248 IPR012340 -
Amo05g2538 672 SUPERFAMILY Nucleic acid-binding proteins 273 433 IPR012340 -
Amo05g2538 672 SUPERFAMILY Nucleic acid-binding proteins 10 112 IPR012340 -
Amo05g2538 672 Gene3D - 117 251 IPR012340 -
Amo05g2538 672 Gene3D - 10 114 IPR012340 -
Amo05g2538 672 Gene3D - 471 616 IPR012340 -
Amo05g2538 672 Gene3D - 265 439 IPR012340 -
Amo05g2538 672 CDD RPA1_DBD_A_like 22 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2538 Amo-Chr5 56333457 56337128 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2538 11 368 Core DNA Replication Machinery Family AT2G06510 17.391 2.46e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2538 - - ahf:112695694 1161.36