Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2492 ATGGAGAGGCACAGATGCAAGCTTTGTTCGAGGACATTCGCCAATGGCAGAGCCCTCGGTGGTCACATGAAGGCTCACTTAGCCACGCTTCCTCTGCCACCCAAGCCTCATCAACCACCTCCTCAACCACTTTCTTTTGAGTACTCCTCTTCTTCTTCCTCTTCAGAATCAGAACACGATGACGATGATGATGAAGAAAAAGCATCAATAGCAACAGAGGCAGCAGAGCCTGTTAGCTCCGTTTCCGATACTTCGCCGGAAGAAAACCTGGCCATGTGCCTCATCATGCTGTCAAGGGACAAATGGAGAAAGACAAGTGTTGAAGAAGAAGAAGAGATGAAGTTGAAGAACAAGAAGGTTCTTCGAGGGAAGCATCATCATCATCATCATCATCGTCTGCAGTGTGACAAGTGTGGGAAAACGTTTCGATCTTCAGGGGCATTGGGGAGCCACAGAAGCATATGCCTCTGTGATGAAGCTGATGGAAGTGAAAGAATCTTTCAATGCCCGTATTGTTCAAAGGTTTTCGGGTCGGGTCAAGCACTCGGTGGCCATAAGAGATCTCATCTTCTCCCATCTTCTTCTTCTTCTTCTCCTGCTTCCATTATCAATGCTAATCTTAGATTGAAACAACAAAGCTTCATAGATCTCAACTTGCCAGCTCCACCTGAAGAAGACGACCTTAGTGTTCTCTCCGATGCATAA 705 0.4667 MERHRCKLCSRTFANGRALGGHMKAHLATLPLPPKPHQPPPQPLSFEYSSSSSSSESEHDDDDDEEKASIATEAAEPVSSVSDTSPEENLAMCLIMLSRDKWRKTSVEEEEEMKLKNKKVLRGKHHHHHHHRLQCDKCGKTFRSSGALGSHRSICLCDEADGSERIFQCPYCSKVFGSGQALGGHKRSHLLPSSSSSSPASIINANLRLKQQSFIDLNLPAPPEEDDLSVLSDA* 235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2492 234 ProSitePatterns Zinc finger C2H2 type domain signature. 169 189 IPR013087 -
Amo05g2492 234 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Amo05g2492 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 133 154 IPR013087 -
Amo05g2492 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Amo05g2492 234 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 68 IPR044303 GO:0006355
Amo05g2492 234 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 68 - -
Amo05g2492 234 ProSiteProfiles Zinc finger C2H2 type domain profile. 167 189 IPR013087 -
Amo05g2492 234 Pfam Zinc finger, C2H2 type 134 153 IPR013087 -
Amo05g2492 234 Pfam C2H2-type zinc finger 3 28 - -
Amo05g2492 234 Pfam C2H2-type zinc finger 167 189 - -
Amo05g2492 234 Gene3D Classic Zinc Finger 131 189 - -
Amo05g2492 234 SUPERFAMILY beta-beta-alpha zinc fingers 134 189 IPR036236 -
Amo05g2492 234 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 71 234 - -
Amo05g2492 234 SMART c2h2final6 4 26 IPR013087 -
Amo05g2492 234 SMART c2h2final6 167 189 IPR013087 -
Amo05g2492 234 SMART c2h2final6 133 153 IPR013087 -
Amo05g2492 234 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 71 234 IPR044303 GO:0006355
Amo05g2492 234 SUPERFAMILY beta-beta-alpha zinc fingers 3 29 IPR036236 -
Amo05g2492 234 MobiDBLite consensus disorder prediction 28 85 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2492 Amo-Chr5 52753068 52754000 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2492 1 231 C2H2 Transcription Factor Family AT3G60580 32.192 4.11e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Amo05g2492 zf-C2H2_6 1.2e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2492 - - adu:107488121 395.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2492 05 52753068 52754000 Amo01g1752 01 41617267 41619349 PCT
Amo01g1752 01 41617267 41619349 Amo05g2492 05 52753068 52754000 PCT