Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2483 ATGGATGATTCAACCTCAGATTGTCAGCTGAATCAGGGCAAAGTAGATTATGAATTTGAATCTAACGAAGTTCCTGAGCCTCTCTCTGTTGTTGATGACCAGTTTGTTTCCAAGGTTGGAATGACCTTTACCACCCTTGAAGATGCTGAAAAATTTTACAGGAACTACGCCAAGGCTGCAGGGTTTTCTACAAGAGTTCGTAGTACAAATAGGAAGAAAAACGAGATTAAGAATCAATTGATTACATGTAGCAGAGAGGAAAGATGGAAATCTAAAATATCTCCGACCGAGAAGACAAATCCGACAGCCGGTTTAAACTGTCCTGCAAGAATTTATATACACTCATTGAAGGAGGTTGATCATTCACACCCCTGCTGTCCAAGTAAAGCAGAGATGCTCAAACAGCACAGGGAACTAAGCATGTCCATTCGTCGTACAATAGAGAATAACGAGGAGGCTGTGTGTTGTTGGGTGCATTCTGCGGATCTCTATGAAGACCGTCATATATGGGTTCCAATTTATCTGGATCACCACTTTTGGGCTGGGATGAGAAGCACACAAAGGAGCGAGAGCATGCATTCATTTTTTAACAAGTTTATTACCCAGAACAGCTCGCTTATTCAATTTTTCAAACAATACGATAATTGTCTTGGAAGCAGGGAGCAAGCAGAGAGAGAATCAGATGCTGCAGATTTTCATACGGTGATACCTTTCAAGATGTGTACTCATCAAAAGTTTAGGAAAGTTCAAGCACAATTCAGAGGAAAAGCGAATTGCATCACTAGATTAACGAATTCTGCTTTAGGCTATTCAGTATACGAAGTTGGAGAACAAGTTTCCAGCTCAATATTCGACAAGTTTGTGGTTACTTACGACTCAGTAGCAGCGGAGCTAAAATGCCAATGCTTATTATTCGAGTCAAGAGGGATATTGTGTCGTCACACACTAAGCATGTTAAGCTTTGAACAAGTAAGCCAAGTGTCACCTAGATATATACTGGAACGATGGAGCAAGAAGGTAAAGAGGCGACACACACACATCAAGAGCAGCCACGACAAGCCACTGTTGGAGCCAGGAAGCAAGAGGTTTGACGAGTTGGTTTTTTCGTTCACAAAATGTTTGCGAATTTGTATCAGAATCGGAGGAACTGAGTGCAATTCTGCACCGTGCCTTCAAAGCCCTCCAAGGATTCGAACAAGAGGACGTCCAAAAAATAGGCTAGGTTCAAAGTTGGACAAACATATTAAAAATGCCTCAAAGAAGAAGAAAACGAAAGCTTTAAACGAGTTAAACCTCTTTGATGCTGGATCAGTGGTGCATTCAAATTCTAGCCAATATCAAGGATGTGTTATGACTTATTAG 1362 0.4112 MDDSTSDCQLNQGKVDYEFESNEVPEPLSVVDDQFVSKVGMTFTTLEDAEKFYRNYAKAAGFSTRVRSTNRKKNEIKNQLITCSREERWKSKISPTEKTNPTAGLNCPARIYIHSLKEVDHSHPCCPSKAEMLKQHRELSMSIRRTIENNEEAVCCWVHSADLYEDRHIWVPIYLDHHFWAGMRSTQRSESMHSFFNKFITQNSSLIQFFKQYDNCLGSREQAERESDAADFHTVIPFKMCTHQKFRKVQAQFRGKANCITRLTNSALGYSVYEVGEQVSSSIFDKFVVTYDSVAAELKCQCLLFESRGILCRHTLSMLSFEQVSQVSPRYILERWSKKVKRRHTHIKSSHDKPLLEPGSKRFDELVFSFTKCLRICIRIGGTECNSAPCLQSPPRIRTRGRPKNRLGSKLDKHIKNASKKKKTKALNELNLFDAGSVVHSNSSQYQGCVMTY* 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2483 453 PANTHER OS03G0843700 PROTEIN 163 364 - -
Amo05g2483 453 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 163 364 IPR031052 GO:0006355
Amo05g2483 453 ProSiteProfiles Zinc finger SWIM-type profile. 287 323 IPR007527 GO:0008270
Amo05g2483 453 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 138 IPR031052 GO:0006355
Amo05g2483 453 PANTHER OS03G0843700 PROTEIN 26 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2483 Amo-Chr5 52589959 52592903 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g2483 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2483 - - adu:110280503 434.106