Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2472 ATGGGCTTTGGGGGGAGAGGCGCTCCTATAAAAGTTTGGAGTAGTGCAGAAACCCTAGTTCCGAGTTGGAGTGCCTACAAGTATGTCTCTGAGCTATGGCGCAAGAAGCAGTCAGATGTCATGAGGTTCCTTCAGCGTGTAAGGTGCTGGGAATATCGTCAGCAACCTTCCATTGTTCGTGTGACAAGACCTACACGCCCTGACAAGGCCCGTCGCCTAGGTTATAAGGCTAAGCAGGGCTATGTTGTTTACCGTGTTCGTGTAAGGAGGGGTGGCCGCAAGAGACCAGTACCCAAAGGTATTGTTTATGGTAAGCCAACAAACCAGGGTGTTACCCAACTGAAATTCCAGAGGAGCAAGAGGTCTGTTGCTGAGGAGCGAGCTGGAAGGAAGTTGGGTGGCCTTAGGGTCCTCAATTCTTATTGGGTGAATGAGGATTCAACCTACAAGTACTTTGAGATAATTATGGTAGATGTTGCCCATGCTGCCATCAGAAACGATCCAAGAATCAATTGGCTGTGCAATCCAGTGCACAAACACAGGGAACTGCGTGGACTTACTTCAGCTGGCAAAAGCAACAGAGGTCTACGTGGCAAGGGACATCTTTATCACAAAAATCGTCCATCCCGCAGGGCAACCTGGAAGAGAAACAACACTCTTTCCCTTCGTCGTTATCGTTGA 681 0.4905 MGFGGRGAPIKVWSSAETLVPSWSAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWVNEDSTYKYFEIIMVDVAHAAIRNDPRINWLCNPVHKHRELRGLTSAGKSNRGLRGKGHLYHKNRPSRRATWKRNNTLSLRRYR* 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2472 226 Gene3D Ribosomal protein l15e 23 226 IPR024794 GO:0003735|GO:0005840
Amo05g2472 226 PANTHER RIBOSOMAL PROTEIN L15 16 226 IPR000439 GO:0003735|GO:0005840|GO:0006412
Amo05g2472 226 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 23 217 IPR012678 GO:0003735|GO:0005840|GO:0006412
Amo05g2472 226 PANTHER RIBOSOMAL PROTEIN L15 16 226 - -
Amo05g2472 226 Pfam Ribosomal L15 24 212 IPR000439 GO:0003735|GO:0005840|GO:0006412
Amo05g2472 226 MobiDBLite consensus disorder prediction 186 208 - -
Amo05g2472 226 ProSitePatterns Ribosomal protein L15e signature. 68 91 IPR020925 GO:0003735|GO:0005840|GO:0006412
Amo05g2472 226 SMART Ribosomal_L15e_2 24 215 IPR000439 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2472 Amo-Chr5 52346760 52348968 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2472 25 226 Cytoplasmic Ribosomal Protein Gene Family AT4G16720 91.584 3.00e-125 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2472 K02877 - gmx:100306052 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2472 05 52346760 52348968 Amo01g1740 01 41009211 41011398 PCT
Amo05g2472 05 52346760 52348968 Amo11g1269 11 43911416 43913680 PCT
Amo01g1740 01 41009211 41011398 Amo05g2472 05 52346760 52348968 PCT
Amo11g1269 11 43911416 43913680 Amo05g2472 05 52346760 52348968 PCT