Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2471 ATGACGCCATTGCCGGTGGAGCAGACGGGCGAATCAGGGGCGACGGAGTCACAGAGATCCATTCCGACGCCGTTTCTGACGAAGACGTACCAGCTGGTGGACGATCCCTCTGCTGATGACCTAATTTCATGGAACGAAGATGGCACCACCTTTATTGTTTGGCGACCAGCTGAATTCGCTCGAGATTTGCTTCCCAAGTATTTCAAGCACAACAACTTCTCCAGCTTCGTTCGCCAGCTCAACACCTACGTAATCATTATTTCTTTCCTTCTTCATGGATTTTCTTCACAGCCAAACAGATTTTCTTATCTTATATTACCTTTACTTGTGCAGGGATTTCGCAAGGTCGTACCTGACCGCTGGGAATTCGCTAATGAATGTTTCCGGCGAGGGGAGAAAGGTTTGCTTCGCGACATACAGAGGCGTAAAATATCGCCGGCAGCTGGTGACAATAACGTGGTGACGGTTGCCATGGCAGCACCGGGGAGAGTGGTGTCGCCTACGCCGACGAATTCCGGCGACGAACAGGTACTATCCTCCAACTCATCTCCGATTGCTCCTCCTGCTGCTGCGCAACACAACAATAACAGTAAAAATACAGTGCACCGCACTACCAGTTGCACCAGTGGACCCGAGCTATTAGAAGAGAACGAGAGGCTTAGGAAAGAGAATGGTCAAATGAAAAACGAGTTGAGTCAATTGAGAGGTTTGTGTAATAAAATACTGGCGTTGATGTCAAACTATGCTTCTCGTTCTTCAGCGCAATTACTAGACTCCTCTGCAAGTGGCGTCGCCGCCGCGGTAGTTGAAGGGAAAGTGGCGTTGGAGCTTTTGCCTGAGAAGGGCGTTCCATGTGCTGTTGACACCGCCGAAGCGGAGGTTCCGAAGTTGTTTGGGGTTTCCATTGGGATGAAACGTTCTAGAACCGAAAGCGAGGCTGAAATTGAAAGAGAAGATCACAATCAAACGCAAACACAAAGGAAAACACAGTCATCACAGGAACCTGAACGCGGGTCAGATGTGAAATCTGAGCCGTTGGATGGGGACGGATCGGATGATCAGGACCCTCGATGGGTCGAGCTTGGGTAA 1089 0.4986 MTPLPVEQTGESGATESQRSIPTPFLTKTYQLVDDPSADDLISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYVIIISFLLHGFSSQPNRFSYLILPLLVQGFRKVVPDRWEFANECFRRGEKGLLRDIQRRKISPAAGDNNVVTVAMAAPGRVVSPTPTNSGDEQVLSSNSSPIAPPAAAQHNNNSKNTVHRTTSCTSGPELLEENERLRKENGQMKNELSQLRGLCNKILALMSNYASRSSAQLLDSSASGVAAAVVEGKVALELLPEKGVPCAVDTAEAEVPKLFGVSIGMKRSRTESEAEIEREDHNQTQTQRKTQSSQEPERGSDVKSEPLDGDGSDDQDPRWVELG* 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2471 362 MobiDBLite consensus disorder prediction 307 324 - -
Amo05g2471 362 SMART hsfneu3 21 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g2471 362 MobiDBLite consensus disorder prediction 163 213 - -
Amo05g2471 362 Pfam HSF-type DNA-binding 25 142 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g2471 362 MobiDBLite consensus disorder prediction 305 362 - -
Amo05g2471 362 Coils Coil 210 237 - -
Amo05g2471 362 MobiDBLite consensus disorder prediction 165 212 - -
Amo05g2471 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 9 83 IPR027725 -
Amo05g2471 362 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 99 348 IPR027725 -
Amo05g2471 362 Gene3D - 17 143 IPR036388 -
Amo05g2471 362 MobiDBLite consensus disorder prediction 333 362 - -
Amo05g2471 362 SUPERFAMILY "Winged helix" DNA-binding domain 22 142 IPR036390 -
Amo05g2471 362 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 99 348 - -
Amo05g2471 362 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-2B 9 83 - -
Amo05g2471 362 PRINTS Heat shock factor (HSF) domain signature 25 48 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g2471 362 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Amo05g2471 362 PRINTS Heat shock factor (HSF) domain signature 76 88 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2471 Amo-Chr5 52290787 52293104 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2471 16 362 HSF AT4G11660 48.787 7.64e-92 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Amo05g2471 HSF_DNA-bind 2.7e-29 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2471 K09419 - gmx:100791020 433.335