Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2470 ATGATGTTGGAGGTTGAGACGGAGCTCGAGGAGTTGAGTTTTGAATTTGATTCATCTGAAGGAGATGGAGTCCATTTATGCCTTTCTTCTTCAAATTGCAACTGTGATGCCACTCTTCTGAAATCCACCCCTGTTTCAGGGCTGAAGCTAGACGCTGGTCAGAGGAAGAGGTACTTGACTCATTTAACTCCTTATATTATTCTCATTTTTGAAGACAACCTTTTGATTCAGATAGTCAAGAAGCATGAAGCTAGGAATTGGAAGAAAATAGCTGCGTATCTTCCAGGGCGAACTGAAGTCCAATGCTTACATCGCTGGCAAAAAGTTTTGGATCCTGATCTTGTGAAGGGTTATTGGACAAAGGAGGAGGATGATCGCCTCACTGAGCTAGTAAGAAAGTATGGTTTGAAGAGATGGGCCGAACTTGCAAAATTCTTACCGGGTCGAATTGGGAAGCAATGCCGAGAGAGGTGGCACAATAATCTTGATCCAGCTATAAAGAAAGATGCATGGACGGAGGAAGAGGAATTGGCACTTGCTCACTATCACCAAATATATGGTAGTAAGTGGGCAATGATTGCAAGGTATCTTCCTGGAAGGTCTGACAACGCCATTAAAAATCATTGGAACCGCTCAATGAAAAAGAAAGGGGATGCATCTTCACATCTTGGTTTTGACCTAAATGTTGCTACTTCCAGTTTTCGCACATCTCCAATAGTGCCAGCTCATGTTTCAGTTAAAGTAGATAGCCATAGTTTCAATGAAATGGATTCGAAGCACAGGGTTGACAACTTCCCAACACACTTGGTTCTTCAAAAGCCCAGTAAATCTCCCAAACGACAGAAAGTTTCTTCCTCAGATGCCAAGAGAGACCAAGTTGGAAATGGAAGCAACAACAAAATCAGCAGTACGTGCCATAATGCAGATGACATGAGTAACGACATAGGATGTGGGGACAATAATGACAGCAGAGATACTCGCACAATATTTGAACAAAGTCCAGAACGTGTACTAAGAAGCTTAGCCATGACCTATGAGAATATTCCTTCTATTATTAGGAAACGAACTCCCACCAAGGCTGAGTGTGCCCAAACTCCTGAAGACGAACGTGTTATTAGTTTACGAAATTTAAAATTGAGCCGGGAGTTTATTCCATCCATTATTACTACACCAAACACTAAAGCCATAGCTAAATCTCTAGAAGGATACATGGAATGA 1218 0.4187 MMLEVETELEELSFEFDSSEGDGVHLCLSSSNCNCDATLLKSTPVSGLKLDAGQRKRYLTHLTPYIILIFEDNLLIQIVKKHEARNWKKIAAYLPGRTEVQCLHRWQKVLDPDLVKGYWTKEEDDRLTELVRKYGLKRWAELAKFLPGRIGKQCRERWHNNLDPAIKKDAWTEEEELALAHYHQIYGSKWAMIARYLPGRSDNAIKNHWNRSMKKKGDASSHLGFDLNVATSSFRTSPIVPAHVSVKVDSHSFNEMDSKHRVDNFPTHLVLQKPSKSPKRQKVSSSDAKRDQVGNGSNNKISSTCHNADDMSNDIGCGDNNDSRDTRTIFEQSPERVLRSLAMTYENIPSIIRKRTPTKAECAQTPEDERVISLRNLKLSREFIPSIITTPNTKAIAKSLEGYME* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2470 405 CDD SANT 170 211 IPR001005 -
Amo05g2470 405 Pfam Myb-like DNA-binding domain 168 210 IPR001005 -
Amo05g2470 405 Pfam Myb-like DNA-binding domain 71 110 IPR001005 -
Amo05g2470 405 Pfam Myb-like DNA-binding domain 116 162 IPR001005 -
Amo05g2470 405 ProSiteProfiles Myb-like domain profile. 163 213 IPR001005 -
Amo05g2470 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 167 217 IPR017930 -
Amo05g2470 405 MobiDBLite consensus disorder prediction 288 311 - -
Amo05g2470 405 Gene3D - 116 167 - -
Amo05g2470 405 SMART sant 167 215 IPR001005 -
Amo05g2470 405 SMART sant 71 112 IPR001005 -
Amo05g2470 405 SMART sant 115 164 IPR001005 -
Amo05g2470 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 71 110 IPR017930 -
Amo05g2470 405 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 166 IPR017930 -
Amo05g2470 405 CDD SANT 119 162 IPR001005 -
Amo05g2470 405 PANTHER TRANSCRIPTION REPRESSOR MYB5 71 272 - -
Amo05g2470 405 SUPERFAMILY Homeodomain-like 71 114 IPR009057 -
Amo05g2470 405 SUPERFAMILY Homeodomain-like 113 209 IPR009057 -
Amo05g2470 405 Gene3D - 70 115 - -
Amo05g2470 405 ProSiteProfiles Myb-like domain profile. 111 162 IPR001005 -
Amo05g2470 405 PANTHER MYB PROTEIN-RELATED 71 272 - -
Amo05g2470 405 ProSiteProfiles Myb-like domain profile. 71 110 IPR001005 -
Amo05g2470 405 CDD SANT 71 110 IPR001005 -
Amo05g2470 405 MobiDBLite consensus disorder prediction 268 311 - -
Amo05g2470 405 Gene3D - 169 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2470 Amo-Chr5 52273064 52275244 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2470 71 216 MYB Transcription Factor Family AT5G02320 67.123 7.66e-69 224
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Amo05g2470 Myb_DNA-binding 2.6e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2470 - K09420 aip:107643059 741.88