Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2450 ATGGATGGGCGAGAAGCAATGTCATTCTCTGGCGGCCCTGCCTCATTCTACATACATAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTGTTGGTGGTTCTCGAACACCAACACAGCCACAACCCGGAGGCTTCCAAGGACCTCCTGGGTTCCGGGCTCTCTCAAACGTTAGAGGTGCTGGTGGCCCTGGTCCTGCTGCTTCTGCATTCTCACCAGAGCCTCAGCATCCTAATTTTGGCCATGGAATCAGCATAGGTTCCTCCTCCCCTGGTGGAGGTGCTGGTGCTGGTTCTGGTGCTGGTGCTGGTGCTGGTGCTGGTGGAGGTGGAGGTGGAGGAGGTGGTGGTGGAGGTGGTAGTGGTGCACCTCCTCCATCTTCAGGGGAGCCTGTAAAGAAGAAAAGAGGGAGGCCAAGAAAGTATGGTCCTGGTGGACCTGTTTCTTTGAGGCTCTCTGCCACTGCTAATTCATCTCCTGGCTCCGGTACTCCCTTGGAAAAGAAGCGGCGCGGACGCCCCCCTGGAAGTGGAAGGAAGCAACAGCTAGCTTCTCTAGGTGAATGGATGAACAGTTCTGCAGGGATGGCCTTCTCACCTCATGTTATAAGTGTTGAACCTGGGGAGGACATTGTAGCAAAGTTATTGTCATTTGCACAGCAGAGACCAAGGGCTGTATGCATAATGTCTGGTACTGGGATAGTTTCTTCGGTCACTATGCGTCAACCTGCTTCTAATACTGTCAGTGTTACTTATGAGGGACGATTTCAAATTTTATGCTTGTCTGGTTCTTATTTGGTTGCGGACGATGGTGGAGCTCGTAGTAGAACAGGCGGCATCAGTGTTTCCCTTTCTAGTCCTGAGGGTCATGTTATTGGTGGTGGCGTTGCTGTGCTTATTGCCGCAACCCCAGTGCAGGTGGTAGTATGCAGTTTTGTATACGGTGGCAGCTCTAAGGCAAAGCCTAAGCAAGTGACAAGCACAAAAGATAGTGGTTCGGAGCCTCAAAGTAGCGACAAGTTAGCTTCTCTGGCAAGTGCACCTCCTCCTAATCAAAACTACAACTCATCTTCATCTGCGGTAGCCATTTGGCCTGGTTCGCAGCCGGCTGATCTTAAAAGTGCACATCCACACACTGGTATTGACCTGACACGTGGATGA 1164 0.5215 MDGREAMSFSGGPASFYIHRGGGGGGGGGGGGVGGSRTPTQPQPGGFQGPPGFRALSNVRGAGGPGPAASAFSPEPQHPNFGHGISIGSSSPGGGAGAGSGAGAGAGAGGGGGGGGGGGGGSGAPPPSSGEPVKKKRGRPRKYGPGGPVSLRLSATANSSPGSGTPLEKKRRGRPPGSGRKQQLASLGEWMNSSAGMAFSPHVISVEPGEDIVAKLLSFAQQRPRAVCIMSGTGIVSSVTMRQPASNTVSVTYEGRFQILCLSGSYLVADDGGARSRTGGISVSLSSPEGHVIGGGVAVLIAATPVQVVVCSFVYGGSSKAKPKQVTSTKDSGSEPQSSDKLASLASAPPPNQNYNSSSSAVAIWPGSQPADLKSAHPHTGIDLTRG* 388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2450 387 MobiDBLite consensus disorder prediction 1 184 - -
Amo05g2450 387 ProSiteProfiles PPC domain profile profile. 194 335 IPR005175 -
Amo05g2450 387 MobiDBLite consensus disorder prediction 321 365 - -
Amo05g2450 387 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 1 387 IPR039605 GO:0003680
Amo05g2450 387 PANTHER AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN 1 387 - -
Amo05g2450 387 CDD DUF296 201 313 IPR005175 -
Amo05g2450 387 Pfam Plants and Prokaryotes Conserved (PCC) domain 201 314 IPR005175 -
Amo05g2450 387 SUPERFAMILY AF0104/ALDC/Ptd012-like 198 315 - -
Amo05g2450 387 MobiDBLite consensus disorder prediction 318 387 - -
Amo05g2450 387 Gene3D - 201 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2450 Amo-Chr5 52106149 52109482 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2450 1 387 AT-hook Motif Nuclear Localized (AHL) Family AT1G63470 46.523 6.41e-93 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2450 - - aip:107643074 589.726