Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Amo05g2448 | ATGGGGAAGGGTAGACCTAGGGCTGTGGAGAAGGGTGTAGTTGGGGCGAGCAACACTGTTACCTGCTGCGAGTCCACCAGTGTACCCTCAGGTCCTGTGTATTACCCTACTGAGGATGAGTTCAAGGATCCCTTAGATTATATTTACAAGATTAGGCCTGAGGCTGAGCCTTATGGGATTTGTAGGATTGTTCCACCTAAGGGTTGGAACCCTCCTTTTGCTTTGGATCTGGATACTTTCACTTTTCCCACCAAGACACAGGCCATTCACAAGCTCCAGGCTCGCCCCGCCGCATCGGACTCCATGACTTTTGACTTGGAGTACTCTAGGTTCTTGCAGGACCAGTGTGGTAAGAAGTCTAGAAAGAGGGTTGTGTTTGAAGGGGAGGACTTGGACTTATGCAAGTTGTTCAATGCGGTTAAGCGCTTTGGCGGGTACGATAAGGTTGTTGATGCCAAGAAGTGGGGGGATGTTGCTAGGTTTTTGAGGCCGGCCGGGAAGATTACGGATTGTGCTAAGCATGTGTTGTGTCAATTGTACCGGGAGCATTTGTATGATTATGAGGAGTTTTATAATAAGATGAATCAAGGGACTGCTGTGAACTGTAAGAAAGGTGAGAGAGATGAGAGGAAGAGTGATCACAGAGTGCAATCCTCGACATCCAAGAAGCATCCCCGGAGGGTTAGTGGTCTGAAAGTTAAGGATTGTAAAGTACATGTAGAAGAAGAACGTGATCAGATTTGTGAGCAGTGCAAGAGTGGTTTGCACGGTGAAGTCATGCTTTTGTGTGATAGGTGCGATAAGGGCTGGCATACTTATTGTCTTTCCCCGCCGTTGAAGCAAATTCCACAGGGAAATTGGTACTGTTTCAGCTGCTTGAATTCTGATAGGGACAGCTTTGGTTTTGTGCCTGGGAAGCATTACACATTGGAAGCCTTTAGGCGTATTGCTGATCGGTCAAGGAGGAGATGGTTTGGATCAGGGCCTGTTTCAAGGGTGCAGATGGAGAAAAAATTTTGGGAGATTGTCGAAGGATCAGTTGGTGAAGTTGAGGTTATGTATGGAAATGACTTGGATACATCTGTATATGGAAGTGGTTTCCCACGCGTTGCTGATCAGAAAATGCAATCCGTTGACGACAAGTTATGGCAAGAATACGCAACAATCCCATGGAATCTCAATAACTTGCCAAAGCTGAAAGGCTCAATGCTTAGATCTATTCAACACAATATCACTGGTGTTATGGTACCCTGGCTATATATTGGGATGTTGTTCTCATCTTTTTGCTGGCACTTCGAGGATCACTGCTTTTACTCAATGAATTATTTACACTGGGGAGAGCCAAAGTGCTGGTACAGTGTTCCTGGCAATCAAGCCAGTGCATTTGAGAAGGTGATGAGAAGTAGTCTTCCTGATCTTTTCGATGCGCAACCTGATCTACTTTTCCAGCTTGTTACTATGTTAAACCCATCTGTCTTGCAAGAAAATGGGGTTCCTGTCTACAGCGTACTTCAGGAGCCTGGGAATTTTGTTATAACCTTCCCACGATCTTATCATGGAGGTTTCAATCTTGGTTTGAATTGTGCAGAGGCAGTAAATTTTGCTCCAGCTGACTGGCTACCTTTTGGTGCATTTGGTGCTGATCTCTATCAGCGGTATCACAAACCTGCTGTATTGTCGCATGAGGAGCTTCTTTGTGTAGTAGCCCAGCATGGCGATGTTGACAGCAGAGTATCTTCATATTTGAAGAAGGAATTGTTGAGAATATCAGATAAAGAAAAGTCTTGGAGAGAGAAACTATGGAAAGATGGTATAATTAAATATTCTCGCATGACTCCTCGCAAATGTCCACAATATGTGGGAACTGAGGAGGATCCAACATGCATTATTTGCCAGCAATATCTCTATCTCTCTGCTGTTGTGTGCAGTTGCCGACCATCATCTTTTGTGTGCCTGGAGCACTCGGAACACCTTTGTGAGTGTAAGACTGTGAAGCTGCGTCTTCTCTACCGTCATTCACTTGCAGAATTGTTTGACTTGGCCTTTTCCATGGAAGAATTTACTTCTGATGACAAGGCTGAATGTAGAAGTGTTAGAAGGCAATCTTCTTGTCAGGGTGCTTTGACCAAAAAGGTGAAAGGTATCTCCGTTAATTTAAATCAACTTGCTACAGAATGGCTTCTGCAATCTAGTACGATTCTTCAGAATCCATTTCTGAGCAATGCATTTGTTACTACACTAAGGAAAGCTGAACAGTTTCTTTGGGCTGGTTCTGAGATGGACTCTGTTCGAGATATGGTGAAGACCTTGATTGAAGCTCAGAAGTGGGCAGAAGGGATAAGAGATTGCATAACAAAAATTGAGTTTTGGTATCAAGACTCAACTGTAAAGAAAGTTCATTTAGAATTCATTGATGAGTTATTGAGATTTAATCCTCCACCTTGCAATGAGCCTAATTATCATAAATTGAAGGAATACGCTGAAGAAGCGAGGTTATTAGTTCAGGATATTGATACTGCTTTATCGAGGTGTTCAAAGATGTCTGAGTTGGAACTTTTATACTCCAGAGCTTGTGGCTTGCCCATCTACATGAAAGAGAGTAAGAAATTAGAAGGGAGGATTTCTTTGATTAAGACATGGCTGGACAGTGTTAGAAAGTGTATCTCTGCGAGACATCCTACTGTCTTAGAGTTTAACATTCTTTACAAGTTAAAATCAGAGATCTTGGATCTTCAAGTTCATCTTCCAGAGATAGAGGTGTTTGAGAATATGCTAAATCGAGCTGAATCTTGTAGCATCCAATGTCGTGAGATGTTAGAAGGTCCTATGAATCTACAGAATGTTAGTTTGCTGCTTAAGGAATGGGACAATTTTGCAGTTGCTGTACCAGAGTTGCAGCTTCTAAGACAATACCATTCAGATACTGTGTTGTGGGTTGCCCATGTTAATGATCTTTTAAGGAGAGCTCATGTGCAGGGTGATCAACATAATACAGTTAATGAATTGATGCACATTTTTGAAGAAGGTTCATCTTTAAAAATTCAAGTTGATGAGTTGCCATTAGTTGAGATGGAGCTAAAGAAAGCTAGTTGCCGGGAGAATGCTTTGAAGGCTCATGATTCTAGAATGCCTTTGGAATTCATTCAGCAACTGCTAGAGGAAGCTAAAATGCTACACATTGAGGAAGAGAAACTATTCGTTAATTTATCTTGTGTTCTTGCTCTTGCCATACCTTGGGAGGAAAGGGCTAGAGAGATTCTTTCACATGAGAATCCTATTTCTGACTTTGAGGACATGATCAGGGATTCAGAAAACATATTTGCTATTCTTCCTTCACTTAATGATGTTAAAGACGCATTTTCTGAAGCTAATTTATGGTTAAGGAATTCAAAGCCATATTTAGTCTCTTCTCCGTGTGCTTCAAGTTCTTTGCTGAAAGTTGAGGACTTGCAGATGTTGGTTTCTGAATCGAAGCTTCTTAAAGTATCTTTGGGAGAAAGAAGGATGCTGGAACTTGTTTTGAAGAACTGCAAACTTTGGGAATGTGAAGCATCTTCTCTACTGGATGATTGTCGGTGCCTTTTCGAATTGGATAACTGTGTTGATGGAGTAAGCAGTGATTTAATGTTTAGGGTGGAAGATTTGATTGCAAGAATCCAATCTGCTATAGCATCTGGTGTTTCACTTGGTTTTGACTTCATAGAGATTTCAAAACTTCAAGCATCTTGTTCTACACTACAATGGTGCAAAAGAGCCCTTTGTTTCAGTGATTGTCCGTCATCGTTAGAGGATGTTTTGGAGGTTGCGGAAGGTCTTTCTCATTCCTCTGTTTCTGGTGCGCTGTTGAAAGTTCTGGTTGATGGAGTTGAATGGCTTAGGAGAGCGTTGGAGGAAATATCTCGACCTTGTAATTCTAGAAGATGCCATTTGACTGAGGTTCAAGATACTCTTAATGATTATAAGAATGTTAATATGACCTTTGGAGCAGTATATGGTCAACTTGAAGAAGCCATTAGAAAACATATGTTATGGCAAGAACAAGTGCACCAATTTTTTGGCCTGAATTCTAGGGATCGATCTTGGTCATTGATGTTGCAGCTGAAGGAGCTTGGAGATACTGTTGCTTTCAGTTGCTCAGAGCTGGATATGATTTTATCTGAAGTTGAGAAGGTGGAAAATTGGAAGAAACGATGCTTAGACAAAATAGGATCTTCTGTCCAAACTGACAATTTGCTGTTTAATGTGCTGAAGAAGATAAAACAGACTCTAGAGAGATCATTGTTCATATATGGTGATGTTAAAGAAAGGAAGGATCAAAACCTCTGCATTTGCTGTCTTTTGCATTCTGAGTGTCAGGAATTTCTTACTTGTTCGACTTGTATGGACTGCTATCATTTGCAGTGCATTGGACTAACAGCAAAGGACACCTGCATTGAAAACTACAAATGCCCTTACTGTGCAATTTTGATTGGTGAATCTCATTATCCAAGTGGAGGTGGCCTCCTGAGGTTTGGTAAGAAGCGTATTGAATTGAAAATTCTCACTGCTCTTCTGTCGGAAGCTGAACATTTCTGTTTGAGGATTGATGAAATGGAAGTTCTGAATGAACTTGTTGAGAAAGCCCTTCTGTGCAAATCTTTCTTGAGAGAAATACTGAACTTTGCATCAACTGTTGTTGATGAAGATATAAGCATTGTCTCTGAAAAATTGATGAAAGCTATAAAGGCTAGCGATGTGGCTGGTGTCTATGATGAACATGATAATTCTGACCTTGAGTTGGCTTTAGCAAAAAACTTGTGGAAAATTCAAGTCAATAGATTGCTAAATGGTGTATGCAAGCCCACAATCCGGCAGATTCAGAAGCATATGAATGAGGGAGTGGATATGGAAATATCAGCTGAAGATCACTATATGCTTAAACTTACAAATGTGAATTGCTTGGGTTTGCAGTGGGCAGAACTAGCAAAAAAGGTGGCAAACGATTCTGGGGCACTCAGCCTAGATAAAGTTTTGGAAGTAATAGTAGAAGGTGAAAACTTGCCTGTTGATGTTGATGAGGAACTCAAGATGTTGAGGTTTCGATGCATGCTTTACTGTATATGTCGAAAGCCTTATGATAAGAAAGGGATGATAGCATGCAAACAATGCAATGAATGGTACCATTTTGATTGCATGAAATTACCATGCACGCAGCAGCTCTACATTTGTCCTGCATGCAACCCCTGTGCAGAAGAACCATTGCCTACAAACCATGAGAGATTAGGTAGTGCTAAATTTGTGGAGCCTAAAACCCCATCTCCGAGGCACACAAACCCGAGAAAGAAACAGAAAAGAGATGTGGGCAATGTCACTTGCAAGATGTTTACAACAGCAACAGCAGCAGAAGATAGAGATAGTAGTAGGTGTAGGAAATCAAATGGGATAGAATGTCTTAGGTGGCAAAACCGAAAGCCTTTTAGAAGAGCAGCTAAGAAGCGTGTTGAGCTTCGAAGTCTTACTCCAATTCTATACACACAACGATAA | 5523 | 0.4135 | MGKGRPRAVEKGVVGASNTVTCCESTSVPSGPVYYPTEDEFKDPLDYIYKIRPEAEPYGICRIVPPKGWNPPFALDLDTFTFPTKTQAIHKLQARPAASDSMTFDLEYSRFLQDQCGKKSRKRVVFEGEDLDLCKLFNAVKRFGGYDKVVDAKKWGDVARFLRPAGKITDCAKHVLCQLYREHLYDYEEFYNKMNQGTAVNCKKGERDERKSDHRVQSSTSKKHPRRVSGLKVKDCKVHVEEERDQICEQCKSGLHGEVMLLCDRCDKGWHTYCLSPPLKQIPQGNWYCFSCLNSDRDSFGFVPGKHYTLEAFRRIADRSRRRWFGSGPVSRVQMEKKFWEIVEGSVGEVEVMYGNDLDTSVYGSGFPRVADQKMQSVDDKLWQEYATIPWNLNNLPKLKGSMLRSIQHNITGVMVPWLYIGMLFSSFCWHFEDHCFYSMNYLHWGEPKCWYSVPGNQASAFEKVMRSSLPDLFDAQPDLLFQLVTMLNPSVLQENGVPVYSVLQEPGNFVITFPRSYHGGFNLGLNCAEAVNFAPADWLPFGAFGADLYQRYHKPAVLSHEELLCVVAQHGDVDSRVSSYLKKELLRISDKEKSWREKLWKDGIIKYSRMTPRKCPQYVGTEEDPTCIICQQYLYLSAVVCSCRPSSFVCLEHSEHLCECKTVKLRLLYRHSLAELFDLAFSMEEFTSDDKAECRSVRRQSSCQGALTKKVKGISVNLNQLATEWLLQSSTILQNPFLSNAFVTTLRKAEQFLWAGSEMDSVRDMVKTLIEAQKWAEGIRDCITKIEFWYQDSTVKKVHLEFIDELLRFNPPPCNEPNYHKLKEYAEEARLLVQDIDTALSRCSKMSELELLYSRACGLPIYMKESKKLEGRISLIKTWLDSVRKCISARHPTVLEFNILYKLKSEILDLQVHLPEIEVFENMLNRAESCSIQCREMLEGPMNLQNVSLLLKEWDNFAVAVPELQLLRQYHSDTVLWVAHVNDLLRRAHVQGDQHNTVNELMHIFEEGSSLKIQVDELPLVEMELKKASCRENALKAHDSRMPLEFIQQLLEEAKMLHIEEEKLFVNLSCVLALAIPWEERAREILSHENPISDFEDMIRDSENIFAILPSLNDVKDAFSEANLWLRNSKPYLVSSPCASSSLLKVEDLQMLVSESKLLKVSLGERRMLELVLKNCKLWECEASSLLDDCRCLFELDNCVDGVSSDLMFRVEDLIARIQSAIASGVSLGFDFIEISKLQASCSTLQWCKRALCFSDCPSSLEDVLEVAEGLSHSSVSGALLKVLVDGVEWLRRALEEISRPCNSRRCHLTEVQDTLNDYKNVNMTFGAVYGQLEEAIRKHMLWQEQVHQFFGLNSRDRSWSLMLQLKELGDTVAFSCSELDMILSEVEKVENWKKRCLDKIGSSVQTDNLLFNVLKKIKQTLERSLFIYGDVKERKDQNLCICCLLHSECQEFLTCSTCMDCYHLQCIGLTAKDTCIENYKCPYCAILIGESHYPSGGGLLRFGKKRIELKILTALLSEAEHFCLRIDEMEVLNELVEKALLCKSFLREILNFASTVVDEDISIVSEKLMKAIKASDVAGVYDEHDNSDLELALAKNLWKIQVNRLLNGVCKPTIRQIQKHMNEGVDMEISAEDHYMLKLTNVNCLGLQWAELAKKVANDSGALSLDKVLEVIVEGENLPVDVDEELKMLRFRCMLYCICRKPYDKKGMIACKQCNEWYHFDCMKLPCTQQLYICPACNPCAEEPLPTNHERLGSAKFVEPKTPSPRHTNPRKKQKRDVGNVTCKMFTTATAAEDRDSSRCRKSNGIECLRWQNRKPFRRAAKKRVELRSLTPILYTQR* | 1841 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Amo05g2448 | 1840 | Pfam | ARID/BRIGHT DNA binding domain | 121 | 188 | IPR001606 | GO:0003677 | |
| Amo05g2448 | 1840 | SMART | JmjN_1 | 30 | 71 | IPR003349 | - | |
| Amo05g2448 | 1840 | SMART | ARID_2 | 95 | 188 | - | - | |
| Amo05g2448 | 1840 | Gene3D | Cupin | 237 | 556 | - | - | |
| Amo05g2448 | 1840 | CDD | ARID | 104 | 188 | - | - | |
| Amo05g2448 | 1840 | SMART | cupin_9 | 385 | 551 | IPR003347 | - | |
| Amo05g2448 | 1840 | ProSitePatterns | Zinc finger PHD-type signature. | 248 | 292 | IPR019786 | - | |
| Amo05g2448 | 1840 | SUPERFAMILY | FYVE/PHD zinc finger | 1432 | 1488 | IPR011011 | - | |
| Amo05g2448 | 1840 | MobiDBLite | consensus disorder prediction | 202 | 227 | - | - | |
| Amo05g2448 | 1840 | Pfam | jmjN domain | 32 | 65 | IPR003349 | - | |
| Amo05g2448 | 1840 | Pfam | PLU-1-like protein | 944 | 1189 | IPR013637 | - | |
| Amo05g2448 | 1840 | Pfam | PLU-1-like protein | 1142 | 1397 | IPR013637 | - | |
| Amo05g2448 | 1840 | SUPERFAMILY | ARID-like | 81 | 201 | IPR036431 | GO:0003677 | |
| Amo05g2448 | 1840 | Pfam | JmjC domain, hydroxylase | 418 | 534 | IPR003347 | - | |
| Amo05g2448 | 1840 | ProSiteProfiles | JmjN domain profile. | 31 | 72 | IPR003349 | - | |
| Amo05g2448 | 1840 | ProSiteProfiles | ARID domain profile. | 98 | 192 | IPR001606 | GO:0003677 | |
| Amo05g2448 | 1840 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE LID | 29 | 924 | - | - | |
| Amo05g2448 | 1840 | MobiDBLite | consensus disorder prediction | 1756 | 1779 | - | - | |
| Amo05g2448 | 1840 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 1684 | 1741 | IPR013083 | - | |
| Amo05g2448 | 1840 | SUPERFAMILY | FYVE/PHD zinc finger | 238 | 295 | IPR011011 | - | |
| Amo05g2448 | 1840 | ProSitePatterns | Zinc finger PHD-type signature. | 1699 | 1739 | IPR019786 | - | |
| Amo05g2448 | 1840 | Gene3D | Cupin | 13 | 134 | - | - | |
| Amo05g2448 | 1840 | ProSiteProfiles | Zinc finger PHD-type profile. | 245 | 295 | IPR019787 | - | |
| Amo05g2448 | 1840 | SMART | bright_3 | 99 | 193 | IPR001606 | GO:0003677 | |
| Amo05g2448 | 1840 | PANTHER | LYSINE-SPECIFIC DEMETHYLASE | 29 | 924 | - | - | |
| Amo05g2448 | 1840 | Pfam | PHD-finger | 247 | 294 | IPR019787 | - | |
| Amo05g2448 | 1840 | Pfam | C5HC2 zinc finger | 628 | 677 | IPR004198 | - | |
| Amo05g2448 | 1840 | CDD | PHD_RSF1 | 248 | 292 | - | - | |
| Amo05g2448 | 1840 | SUPERFAMILY | FYVE/PHD zinc finger | 1695 | 1747 | IPR011011 | - | |
| Amo05g2448 | 1840 | ProSiteProfiles | JmjC domain profile. | 385 | 551 | IPR003347 | - | |
| Amo05g2448 | 1840 | SMART | PHD_3 | 247 | 293 | IPR001965 | - | |
| Amo05g2448 | 1840 | SMART | PHD_3 | 1698 | 1740 | IPR001965 | - | |
| Amo05g2448 | 1840 | SMART | PHD_3 | 1441 | 1487 | IPR001965 | - | |
| Amo05g2448 | 1840 | SUPERFAMILY | Clavaminate synthase-like | 377 | 571 | - | - | |
| Amo05g2448 | 1840 | MobiDBLite | consensus disorder prediction | 202 | 219 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Amo05g2448 | Amo-Chr5 | 52081876 | 52097991 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Amo05g2448 | 40 | 95 | JUMONJI Transcription Factor Family | AT4G20400 | 51.667 | 6.98e-10 | 62.4 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TR | ARID | Amo05g2448 | PLU-1 | 1.3e-11 | No_clan |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Amo05g2448 | K11446 | - | gmx:100789512 | 2949.07 |