Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2446 ATGGTGCCGGAGAAGGTGAAGAAACAGCTTGCTTTAGCTGTGAGAAGCATTCAATGGAGCTATGCAATCTTTTGGTCTAGCTCACCTACCCAACCAGGGGTGTTGAGCTGGGGTGAAGGTTATTACAATGGAGACATCAAAACTAGAAAGACAAGCCAAGTGGCAGAACATAACTCTGATCAAATAATAAGCTTACAGAGAAGTGAGCAGCTGCGAGAGCTATACTCGTCCCTTGCAGACTCGAAATCCTGCTCGCAGACGAAAAGGCCATCGGCGGCACTGTCCCCTGAAGATCTCACAGATACTGAGTGGTTCTACTTGGTTTGCATGTCCTTTGTGTTCAACATTGGCCAAGGTTTACCTGGAAGATCATTGGCATATGGTCAGCCTATTTGGTTGTGCAATGCTCATTCTGCTGATAATGGTGTTTTCTGTCGCTCATTACTTGCTAAGACAGTGGTGTGCTTTCCCTTTCTGGATGGGGTTATCGAGCTAGGTACAACTGATCCGGTCTCCGAAGACTATAGTCTTATTCAAGTGATAAGGAATTCTTTCTTGGATATTCTTGAAACCAACCTTCCAAATAATCCAGGAGCTAATTTGAACACAAGAAACAAGGAAGAAGGTGGTGTTGCATGTGAAGGATTTGACCATAATGCTTATGGTCTTAAACTAACCCCAGAAGTAATAGGATATGAACTAATCAACATAACTTCTCCTACTACTAGTTCAAATGCATTACAAGCCAACCAACAAACAGATGGAAGAACAATGTTTCCAACTGAATTCAGCAACTGTTTCCATAACTCCAGGAATTCTAGTGATTGTTTGTCCGAAAATCATTGTGCACAGGACCTTCAACAATGCAATGATAACCCAAAAACAACCTTGGTGAATCTCGGAAGCGACGATAAGCATTATCAGAGGATACTCTCTGCCCTTCCAATACGCCCTGATGATGACCGGTTAATCATGAGAGTGCATCTTCGAAATTTTCGTGGGGAATCAAGCTTTGCCATTTGGAAGCAACTAGGATCAATGGATTGTCAAAGATCAAGAAGAGGAGGAACACCACAAAACTTGTTAAAGAAGGTATTGTTTGAAGTTCCTCTGATGCACATGGACGGATTGCTTGAGTCTCAAGAAAAGATCGGTTCCAAAGACAGAATGAGATTATCAGAGGTAGATGATGTTGGCATGAACCATGCTTTGTCAGAAAGAAAGAGAAGAGCAAAACTAAACGAAAGGTTTTTAACTCTAAGATCAATGGTTCCTACAATTAGTAAGGATGACAAGGTTTCAATATTAGATGATGCCATGGAATACCTTAGAAAACTTGAGGAAAAGGTAAGGAAGTTAGAAGCTGAAAAGGATGTAACAGATTTGGATGGTATAGTAAGTACAAGAACATCTCAGGATATGGTGGAGAGGGCTTCTAATAACAATAGCAACAAGAATTCGAAATCGGTGTCAAACAAGAGGAGGGCTTGTGAGGCTGCTGGTGATGAAGAGATGAACAATTCAGAGATTGATGTTGGAATCTATGTGAGTGAGAGTGAAGTTGTGATTGAAATGAAGTGTCCTTGGAGAGAAGGACTTCTGCTGGAAACTGTGGAAGCACTTAGCAGCCTCCATTTAGATTGTCATTCACTTCAGTCATCAAAATCTCATGGGACTCTCTATCTCACAATTAAATCTAAGTTCAGAGGAGCAAATAATGTTGCACCAGTAAAAAGGATTAGACGCACACTCCAAAAAGCGGCTATGAAGAGTTGA 1776 0.4139 MVPEKVKKQLALAVRSIQWSYAIFWSSSPTQPGVLSWGEGYYNGDIKTRKTSQVAEHNSDQIISLQRSEQLRELYSSLADSKSCSQTKRPSAALSPEDLTDTEWFYLVCMSFVFNIGQGLPGRSLAYGQPIWLCNAHSADNGVFCRSLLAKTVVCFPFLDGVIELGTTDPVSEDYSLIQVIRNSFLDILETNLPNNPGANLNTRNKEEGGVACEGFDHNAYGLKLTPEVIGYELINITSPTTSSNALQANQQTDGRTMFPTEFSNCFHNSRNSSDCLSENHCAQDLQQCNDNPKTTLVNLGSDDKHYQRILSALPIRPDDDRLIMRVHLRNFRGESSFAIWKQLGSMDCQRSRRGGTPQNLLKKVLFEVPLMHMDGLLESQEKIGSKDRMRLSEVDDVGMNHALSERKRRAKLNERFLTLRSMVPTISKDDKVSILDDAMEYLRKLEEKVRKLEAEKDVTDLDGIVSTRTSQDMVERASNNNSNKNSKSVSNKRRACEAAGDEEMNNSEIDVGIYVSESEVVIEMKCPWREGLLLETVEALSSLHLDCHSLQSSKSHGTLYLTIKSKFRGANNVAPVKRIRRTLQKAAMKS* 592
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2446 591 MobiDBLite consensus disorder prediction 471 490 - -
Amo05g2446 591 PANTHER TRANSCRIPTION FACTOR EGL1 3 587 - -
Amo05g2446 591 PANTHER TRANSCRIPTION FACTOR TT8 3 587 - -
Amo05g2446 591 Coils Coil 436 463 - -
Amo05g2446 591 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 399 459 IPR036638 GO:0046983
Amo05g2446 591 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 7 185 IPR025610 -
Amo05g2446 591 MobiDBLite consensus disorder prediction 471 502 - -
Amo05g2446 591 SMART finulus 403 452 IPR011598 GO:0046983
Amo05g2446 591 Pfam Helix-loop-helix DNA-binding domain 401 447 IPR011598 GO:0046983
Amo05g2446 591 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 397 446 IPR011598 GO:0046983
Amo05g2446 591 Gene3D - 395 461 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2446 Amo-Chr5 52058389 52061724 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2446 2 588 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G63650 43.200 7.56e-146 432
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Amo05g2446 bHLH-MYC_N 3e-46 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2446 - - gmx:100808167 626.706