Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2444 ATGGGAGTGAACAGATCTCCCTCCAAGTGCTCCTCCGTTGGCATTCAGGGCATTGCTTGGTCTTTCGGCGGCATGATCTTCGCCCTTGTTTACTGCACTGCTGGAATCTCCGGCGGACACATAAACCCGGCGGTGACCTTCGGGTTGTTTCTGGCAAGGAAGCTTTCACTGACAAGGGCAGTGTTCTACATGGTGATGCAGTGTCTTGGAGCCATTTGCGGCGCTGGTGTGGTGAAGGGGTTCGAAGGGAATGCGAGGTTTGAGATGTATAAAGGTGGAGCTAATATGGTTAACCATGGATACAGCAAAGGTGATGGGCTTGGTGCTGAGATTGTTGGTACCTTTGTTCTTGTTTACACTGTGTTCTCTGCTACTGATGCTAAAAGAAACGCAAGAGACTCACATGTTCCCATTTTGGCACCTCTTCCGATCGGCTTTGCTGTCTTCTTGGTCCACTTGGCAACCATTCCTATCACTGGAACTGGGATTAACCCAGCTAGGAGCCTTGGTGCTGCCATCATCTTCAACAGAGACCATGCATGGAATGATCAATGGATTTTCTGGGTTGGGCCTTTCGTTGGAGCTGCTATTGCTGCCGTGTACCACCAGATAGTCATCCGAGCTATTCCTTTCAAGTCAAGGCCTTAA 648 0.4985 MGVNRSPSKCSSVGIQGIAWSFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAVFYMVMQCLGAICGAGVVKGFEGNARFEMYKGGANMVNHGYSKGDGLGAEIVGTFVLVYTVFSATDAKRNARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNRDHAWNDQWIFWVGPFVGAAIAAVYHQIVIRAIPFKSRP* 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2444 215 Pfam Major intrinsic protein 10 202 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 CDD MIP 8 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 PRINTS Major intrinsic protein family signature 109 127 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 PRINTS Major intrinsic protein family signature 185 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 PRINTS Major intrinsic protein family signature 145 167 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 PRINTS Major intrinsic protein family signature 59 78 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 PRINTS Major intrinsic protein family signature 22 46 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 SUPERFAMILY Aquaporin-like 10 206 IPR023271 -
Amo05g2444 215 ProSitePatterns MIP family signature. 40 48 IPR022357 -
Amo05g2444 215 TIGRFAM MIP: MIP family channel proteins 9 201 IPR000425 GO:0015267|GO:0016020|GO:0055085
Amo05g2444 215 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 214 IPR034294 -
Amo05g2444 215 Gene3D Glycerol uptake facilitator protein. 1 213 IPR023271 -
Amo05g2444 215 PANTHER AQUAPORIN PIP1-2-RELATED 1 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2444 Amo-Chr5 52041188 52042733 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2444 1 214 Major Intrinsic Protein MIP AT1G01620 85.981 6.35e-136 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2444 K09872 - gmx:121174914 417.542