Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2436 ATGTATTCTGATATGCATGGTTTTGATATTTTGTCACACATGTTCAATGAAGAAATCCCAGACCTTATTCTTTTCTCTGATGATCCTCTTCCTCTCTTCACAGCTCAAGAAAACATAATTGATTCTCTTGATCCTTTATCCCTTTCATGCATCAATTTCTCAGAGTCCCAAATGGTGGCGGATCATTGTTCCAACAATCATCAGCACCATCTAAGTCTTCCTCACAGTTACCTGCAGAGGAGCTCCAGTTGCAAATCGTTTGATAGAAAACCAGTTTTTCCACCATGTGAAGCTCACAACGACACTTTGATGGATTCCCCAACTTCTGAGTGGGAAAACGATTTCTTCAAAGGACAAATAAGGAGGGTCTTCAGTGCAGGAGACTTGCAGAACATGCATGCAACTCAAACACTTCAGACGGATGAACCGTACTTGAAGGTGGGGCGTTACAGTCCCCAAGAAAGGAAAGAGAAAATCTCAAAGTACAGGGCCAAGAGAAGCCAGAGGAAGTTCAACAAGACTATCAAGTATGCATGCCGAAAGACACTAGCCGACAATCGAGTCCGCATACGTGGCAGATTCGCACGCAACGACGATACCAGCGTGATTCCAAAAGCCCCATGTTCAACTTCAAATACACAGCAAGACCAAGATGAATTCTGGGTAAATATACTTGTACATTTGAAGCGCACTTATTTATTAATATTAATATTAATTAGTTGA 723 0.4163 MYSDMHGFDILSHMFNEEIPDLILFSDDPLPLFTAQENIIDSLDPLSLSCINFSESQMVADHCSNNHQHHLSLPHSYLQRSSSCKSFDRKPVFPPCEAHNDTLMDSPTSEWENDFFKGQIRRVFSAGDLQNMHATQTLQTDEPYLKVGRYSPQERKEKISKYRAKRSQRKFNKTIKYACRKTLADNRVRIRGRFARNDDTSVIPKAPCSTSNTQQDQDEFWVNILVHLKRTYLLILILIS* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2436 240 Pfam CCT motif 155 197 IPR010402 GO:0005515
Amo05g2436 240 PANTHER CCT MOTIF FAMILY PROTEIN 52 230 - -
Amo05g2436 240 ProSiteProfiles CCT domain profile. 155 197 IPR010402 GO:0005515
Amo05g2436 240 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 52 230 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2436 Amo-Chr5 51957721 51959476 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2436 125 200 C2C2-CO-like Transcription Factor Family AT5G15850 38.158 1.35e-11 61.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Amo05g2436 CCT 1.4e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2436 - - adu:107488152 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2436 05 51957721 51959476 Amo13g3430 13 115369771 115371520 PCT