Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2433 ATGGCTCGAGCAGTGTGCGAAGAGAAATCGAGGGAGATGGTGTCATCATCAGGTGGTTTCTGTTACTCGGGGACGACGATGGAAGGGTTGGTGGGGGACCCTGCAGACATGTTCAACAACCTCACCAGTGGCATGGACATGGTAGGGTTTTCGAAGAATGTTGAGCAGCAGAGTGATAGCAACAACCCTCACATGTGGAAGGCTTTGTTTGGGAAACAAGGGCCTTCCAATAGGAGCATCAACAACGATTCTTCTTCAGCCTCCTTCTACCAACAGCAACAGGTTGATGATGATTCATCGTGGCAGGAGAACAGGTTGGTGGTTGACGATTCATCTCTGAGGTGTGTGTTCCCATGTGAAGGAAACGAGAGGCCAAGTCAAGGTCTCTCGCTCTCTCTAAGTTCAACTAATCCCTCATCCATTGGCTTGCAATCTTTTGAGCTCAGACAAACCACTCACCCTCACCCTCACCCTCAGTCTCAGCCTTATTATGCATATCAAAATTTTGCTAATAATAATAATAAAGCTGCAGCTTCCTCCTCATCTACTAGTGCTTATCAAGGACACTTGATGCTCAAGAACTCCAAGTACTTAGTTCCAGCACAGGATCTTCTCAACGAGTTTTGTAGCCTGGCCATAAAGCACAAGTCCAACAACAACAACCACCAACACTGGGAAGATCACGATTCCTCAAAGAAGCCTTCTCCTACCTCTATTGAATTCCTGGAGCTGCAAAAGCGAAAGACCAAACTGCTTTCCATGCTCGAAGAGGTTGACAGGAGATACAAGAACTACCGGATTCAGATGAAGGCGGTGGTGTCTTCCTTTGAGGCGGTGGCTGGGAACGGTGCTGCCACGGTTTACACGGCTTTGGCACAGAAAGCCATGTCTAAATATTTCAGGAACTTGAAGGATGCCATAATGGGGCAGATTCAGGCGACAAGAAAGGCCATGGGAGAGAAAGATCCAGTTGCACCAGGCACCACCAAGGGTGAAACCCCGAGGCTGAAGATCATTGACCAAGCTTTGAGGCAGCAAAGGGCATTCCAGCAAATGAGCATGATGGAAACTCATCCATGGAGACCTCAGCGTGGCCTTCCCGAGCGCTCCGTTTCTGTTCTTCGTGCTTGGCTCTTTGAGCATTTCCTCCATCCTTACCCAAGCGACGTTGATAAACATATTCTAGCCCGCCAAACTGGCCTATCAAGAAGCCAGGTTTCAAACTGGTTTATCAACGCAAGGGTTCGTCTGTGGAAGCCAATGGTGGAGGAAATGTACATGGAGGAATTGAAGGAACAAGAAAACATGATGGCTTCTTCGGAGGGTGCTGATGACCCGGACCTCCACCTGCCATCATCACGATCGGAGGATCAGAAGCCAAGCGTAGTGGTTGGAATGGAGTCCGATCAGTGTGCGTCATCATCCATGCTCAACAACAACATAAAAAACGACCCAAAGAGCAGCCATAATAATCCGGAAGAAGAATGCTTGGGGAGAGTGATGGACACATTTGGATCGGTGGAGCTTGATTTCTCTTCATACACACAGCAGCAGCAGCAACAGCAGGGTTTCAATGGGGTTTCTTTGACTCTAGGGTTACAACAGCACGGTGGAAGCGGGGTGAGCCTGGCGTTCCCTCCTCCTCCGGTGAGCAGTCATCATAGCTCGCTCTTCTACGCAACAACCAGGGATCAGATAATGGACAGCTGTCCACCCTCATCGTCATCTATAGTTCATCACTACTCTCTTGTTGATGGCGAACCACAAAATCTTCCTTACAGGAATCTCATGGGTGCACAGTTGCTTCATGACCTCGCTGGCTAA 1824 0.4896 MARAVCEEKSREMVSSSGGFCYSGTTMEGLVGDPADMFNNLTSGMDMVGFSKNVEQQSDSNNPHMWKALFGKQGPSNRSINNDSSSASFYQQQQVDDDSSWQENRLVVDDSSLRCVFPCEGNERPSQGLSLSLSSTNPSSIGLQSFELRQTTHPHPHPQSQPYYAYQNFANNNNKAAASSSSTSAYQGHLMLKNSKYLVPAQDLLNEFCSLAIKHKSNNNNHQHWEDHDSSKKPSPTSIEFLELQKRKTKLLSMLEEVDRRYKNYRIQMKAVVSSFEAVAGNGAATVYTALAQKAMSKYFRNLKDAIMGQIQATRKAMGEKDPVAPGTTKGETPRLKIIDQALRQQRAFQQMSMMETHPWRPQRGLPERSVSVLRAWLFEHFLHPYPSDVDKHILARQTGLSRSQVSNWFINARVRLWKPMVEEMYMEELKEQENMMASSEGADDPDLHLPSSRSEDQKPSVVVGMESDQCASSSMLNNNIKNDPKSSHNNPEEECLGRVMDTFGSVELDFSSYTQQQQQQQGFNGVSLTLGLQQHGGSGVSLAFPPPPVSSHHSSLFYATTRDQIMDSCPPSSSSIVHHYSLVDGEPQNLPYRNLMGAQLLHDLAG* 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2433 607 MobiDBLite consensus disorder prediction 475 494 - -
Amo05g2433 607 PANTHER HOMEOBOX PROTEIN BEL1 HOMOLOG 4 551 - -
Amo05g2433 607 Pfam Associated with HOX 191 308 IPR006563 -
Amo05g2433 607 MobiDBLite consensus disorder prediction 74 101 - -
Amo05g2433 607 Gene3D - 363 425 - -
Amo05g2433 607 SUPERFAMILY Homeodomain-like 361 427 IPR009057 -
Amo05g2433 607 MobiDBLite consensus disorder prediction 433 462 - -
Amo05g2433 607 ProSiteProfiles 'Homeobox' domain profile. 357 420 IPR001356 GO:0003677
Amo05g2433 607 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 4 551 - -
Amo05g2433 607 SMART HOX_1 360 424 IPR001356 GO:0003677
Amo05g2433 607 SMART prehox3 186 309 IPR006563 -
Amo05g2433 607 MobiDBLite consensus disorder prediction 55 101 - -
Amo05g2433 607 Pfam Homeobox KN domain 377 416 IPR008422 GO:0003677|GO:0006355
Amo05g2433 607 CDD homeodomain 360 421 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2433 Amo-Chr5 51858923 51863439 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2433 103 606 Homeobox Transcription Factor Family AT5G41410 45.406 2.15e-129 391
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Amo05g2433 POX 2.7e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2433 - - lang:109331282 665.996
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2433 05 51858923 51863439 Amo13g3415 13 114638194 114642253 PCT