Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2419 ATGGCGAAGGAACTTGAGAACAAAGCCAAAGAGGCATTCTTGGATGACGATTTTGCCCTCGCCGCCGATTGCTACTCAGAAGCCATCAACTTGGATCCCAGCAACCCTCTTCTTTATGCCGACAGAGCCCAAGCCCATATCAAGCTCCAAAACTTCACAGAAGCCGTTTCTGATGCGAACAAAGCCATTCAATTGAGTCCTTCGCTGGCTAAGGCCTACCTTCGTAAGGGAACTGCGTGCATTAAGCTGGAAGAGTATCAAACTGCAAAGGTAGCACTCCAAACCGGTGCCTCTTTTGCTCCCGACGATTCCAGATTCACCAAGCTCATTCAAGATTGTGATCGCTACATTGCAGAAGAATCGAATGATCTTGCTAGCACCTTATTGCCCCGCGTCCCCACAACTCCTGCCGGTAATGGTTCGCATTCGACTGATAGAAGTATAGATTCTACTAAAGAAGCTGAAAGAGACAGTTCGGTACCCCAAATCAATGAAGTTGCAACAACCAGGCCAAAATTCAGGGAAAAAGTGACTGCAACTTTTGATCTGCTATTAATTCTACATGAATACTACCAGAGGCCAGAAGAAGTGGTTGTGACGATATTTGCTAAAGGCATACCAGCAGACGACGTAATTGTTGACTTTGGTGAACAGATTATGAGTGTTACTATTGCTGTTCCCGGACAAGAACCCTATCGTTATCAACAACGATTGTTCGGAAAGATAGTACCCGATAAGTGCAGAGTCCTGGTGTTGTCAACTAAAGTTGAAATCCGCCTTGCAAAAGCTGAAGCTCTTAATTGGACATCTCTGGAATATAGCAAGCATGTGCTTCCTCAGAAAATAAATGCGATGACAAATCAACCTGAAAGGCCAACATACCCATCATCAAACCAAGGACAAAAGATTGGGATAAGTTGGAAGCTCTGA 930 0.4484 MAKELENKAKEAFLDDDFALAADCYSEAINLDPSNPLLYADRAQAHIKLQNFTEAVSDANKAIQLSPSLAKAYLRKGTACIKLEEYQTAKVALQTGASFAPDDSRFTKLIQDCDRYIAEESNDLASTLLPRVPTTPAGNGSHSTDRSIDSTKEAERDSSVPQINEVATTRPKFREKVTATFDLLLILHEYYQRPEEVVVTIFAKGIPADDVIVDFGEQIMSVTIAVPGQEPYRYQQRLFGKIVPDKCRVLVLSTKVEIRLAKAEALNWTSLEYSKHVLPQKINAMTNQPERPTYPSSNQGQKIGISWKL* 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2419 309 Gene3D - 186 275 IPR008978 -
Amo05g2419 309 PANTHER PROTEIN SGT1 HOMOLOG 1 299 IPR044563 GO:0051087
Amo05g2419 309 MobiDBLite consensus disorder prediction 127 145 - -
Amo05g2419 309 PANTHER PROTEIN SGT1 HOMOLOG A 1 299 - -
Amo05g2419 309 SMART tpr_5 2 35 IPR019734 GO:0005515
Amo05g2419 309 SMART tpr_5 70 103 IPR019734 GO:0005515
Amo05g2419 309 SMART tpr_5 36 69 IPR019734 GO:0005515
Amo05g2419 309 MobiDBLite consensus disorder prediction 127 165 - -
Amo05g2419 309 ProSiteProfiles CS domain profile. 183 272 IPR007052 -
Amo05g2419 309 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Amo05g2419 309 SUPERFAMILY HSP20-like chaperones 186 278 IPR008978 -
Amo05g2419 309 CDD p23_CS_SGT1_like 189 272 - -
Amo05g2419 309 MobiDBLite consensus disorder prediction 286 309 - -
Amo05g2419 309 Pfam Tetratricopeptide repeat 39 68 IPR019734 GO:0005515
Amo05g2419 309 Pfam Tetratricopeptide repeat 70 102 IPR019734 GO:0005515
Amo05g2419 309 SUPERFAMILY TPR-like 2 113 IPR011990 GO:0005515
Amo05g2419 309 Pfam CS domain 188 262 IPR007052 -
Amo05g2419 309 Gene3D Tetratricopeptide repeat domain 1 127 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2419 Amo-Chr5 51679733 51683259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2419 1 94 U-box Gene Family AT3G07370 34.043 1.72e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2419 K12795 - gmx:100784022 358.607