Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2417 ATGGACTGGGATTTGCACGCTATAGTGAGAGGATGCACCAATACTCATCAACCCGACAACATCCTAGGTGATCTTAACTATTTCCAGTTAAGTCCTCAACAAGAAATAGATGAACGTTTCTTCAAGTCTCACCAATTCTCAGAAACAGAAACCATCACTACTGCCATCGTTGATGATGAATTGGAAGAGCTTTACAAACCTTTCTATCCTTCTACTACTGTTGATACTACAACTAGTTCCCACCCTACCTCCGCTGAAGTCAACAAAGTACTCCATCTCAAACCTTCAGATCCAACACCATCTAAATGTAAAAGAAGTGATGGATGGGCATGGCGTAAATACGGGCAGAAACCAATAAAAGGATCAGAGTATCCGCGGAGCTATTACAGGTGTAGCAGCTGCAAAGGATGCTTGGCTAGGAAACAAGTTGAACGGAGCCATTCCGATCCACAAGTTTTCATAGTTACCTACACAGCTGAACACACCCATCCTCCTCACCCCATCACTACTATTCCAACAAACTCACAAGCACAAGGAACAGTAGTAGGAAGAGGCTGGAAGAGGAGAACCAATCTATAG 579 0.4352 MDWDLHAIVRGCTNTHQPDNILGDLNYFQLSPQQEIDERFFKSHQFSETETITTAIVDDELEELYKPFYPSTTVDTTTSSHPTSAEVNKVLHLKPSDPTPSKCKRSDGWAWRKYGQKPIKGSEYPRSYYRCSSCKGCLARKQVERSHSDPQVFIVTYTAEHTHPPHPITTIPTNSQAQGTVVGRGWKRRTNL* 193
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2417 192 MobiDBLite consensus disorder prediction 164 192 - -
Amo05g2417 192 SUPERFAMILY WRKY DNA-binding domain 105 165 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo05g2417 192 SMART WRKY_cls 105 165 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g2417 192 MobiDBLite consensus disorder prediction 167 181 - -
Amo05g2417 192 Pfam WRKY DNA -binding domain 107 164 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g2417 192 ProSiteProfiles WRKY domain profile. 106 166 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g2417 192 PANTHER WRKY TRANSCRIPTION FACTOR 63-RELATED 2 167 - -
Amo05g2417 192 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 2 167 IPR044810 GO:0003700
Amo05g2417 192 Gene3D WRKY domain 85 159 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2417 Amo-Chr5 51668955 51669712 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2417 2 164 WRKY Transcription Factor Family AT4G01250 39.691 1.75e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo05g2417 WRKY 2.1e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2417 - - cit:102612567 151.369