Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2407 ATGGAACAGAAGAGCTTGTTGATATCGGCGCTGAGTGTTGGGGTTGGAGTGGGAGTTGGGATAGGCTTAGCTTCTGGACAAAGCCTTGGTAGCACATGGGGTGCAACTTCTTCTTCTTCTTCAAACTCAAACGCCATCACTCCCATGAAATTGGAGCAGGAAATGCTTAAACTCGTGATTGATGGCGGAGACAGCAACATTACTTTTGATAACTTCCCTTATTATCTCAGTGAGCAGACAAAGGTTTTGTTGATAAGTGCCGCTTATGTTCATTTAAAGCATGCTGATATTTCCAAATATACGCGCAATCTTGCTCCTGCAAGCCGAACTATTCTGCTTTCAGGGCCAGCAGTTCAGGCTAACTTAAACTTTCTCCACTTTCATGGCTTCAAAGAACTTTACCAGCAGGTTTATGCCAAGGCTTTGGCTCACTACTTTAAGGCCAAGTTGCTTCTCTTGGATTTAACTGACTTTTCGTTGAAGATTCAGAGTAGATATGGTTCTTCTGCAAACAAGGAATCTGCTTCCTTCAAAAGATCTACTTCAGAGTCCACTCTGGAGCGGTTATCTGACATGTTTGGATCATTTTCAATCTTTTCACAGAGGGAAGAGCCTAAGGGCAAAATACAGAGGCAAAGCAGTGCAATGGACCTCCGATCAATGGGGACTGAAGGATCTTGTAATCCTCCTAAGATTCGTCGAAATGTGTCTGCCTCCGCAAATATTAGTAGCCTTGCCTTGCAAAGCAATTCTTCAAATTCAGCTCCTCTGAAGCGCACAACCAGCTGGTCTTTTGATGAGAAGCTTCTTATACTGACCCTTTACAAGGTTCTGCTTTTTGTGTCAAAAACCAATCCCATTGTGCTATATCTGCGAGATGTTGACAAGTTGCTACATAGATCAACAAGGATTTTTAACCTGTTCCAGAAAATGTTGAGTAAATTATCTGGACCAATTCTGATTCTTGGTTCACGAGTTTTGGATGCTGATAACGACTTCCAAGAGGTAGATGACAGACTTAGTTTGCTGTTCCCTTACAATCTGGTAATCAGACCCCCAGAAGATGAATCGCATCTCGTCAGCTGGAAGAGTCGGTTTGAAGAGGACATGAAGATGATACAGGTTCAGGATAACAAGAACCATATCATGGAAGTGCTTGCAGCCAATGATCTTGATTGTGATGACCTGGACTCTGTCTGTGTGGCGGACACAATGGTTCTCAGCAACTATATAGAAGAGATTGTTGTGTCTGCAATTTCATATCATTTAATGAATAACAAAGATCCTGAATACAGAAATGGGAAACTTGTTATTCCATGCAATAGTTTGTCCCGTGCATTGAGTATATTCGAGGAAGGGAAATTCAGTGAAAAAGATACGTTAAAATTAGAAGCTCAGGCAGTAAAATCTGAGAAAAAGGAAGAACCTGCTATGAAACGAGAAGCAAAGTCTGAAAATCCTGTTCCTGTTAAGAAGGCTGAAGCAGAAATATCAACTTCAGTGGTAAAGGCTGAGGGTGAAAACTCAGCTCCAGCTCCCAAAGTTGAAGTTCCTCCTGATAATGAATTCGAGAAGCGAATAAGACCTGCGGTAATACCAGCAAATGAAATTGGTGTGACATTCTCAGATATTGGTGCCTTAGATGAGACCAAGGAATCCCTTCAAGAACTAGTAATGCTTCCTCTTCGAAGGCCGGATCTCTTCAAAGGAGGCCTTCTAAAGCCCTGTAGAGGAATATTGCTGTTTGGTCCTCCTGGCACTGGAAAGACAATGCTGGCAAAGGCCATCGCGAACGAGGCCGGGGCAAGTTTCATAAACGTGTCCATGTCTACCATCACTTCCAAATGGTTTGGTGAAGATGAGAAGAATGTTCGCGCTTTATTCACGCTGGCAGCCAAGGTCTCGCCAACAATCATATTTGTTGATGAGGTTGACAGCATGCTTGGGCAACGGAGCAGAGTTGGGGAGCATGAAGCCATGAGGAAAATCAAGAATGAGTTTATGACTCACTGGGATGGACTAATGACAAAACCGGGGGAGCGCATCCTTGTTCTTGCTGCAACCAATAGGCCCTTTGACTTGGATGAAGCAATTATTAGGAGATTTGAAAGAAGAATTATGGTAGGGCTACCATCTGTGGAGAATAGGGAAAAAATTTTGAAGACACTTCTGGCAAAAGAGAAGGTGGACGAGGATCTTGATTTGAAGGAACTTGCAACTATGACGGAAGGATACAGTGGCAGTGACTTGAAGAACTTGTGCATAACTGCTGCTTATAGGCCTGTTAGAGAGTTGATTCAACAAGAGAGACTAAAGACTCTGGAAAAGCAGAAAGGTAGCCAAGGAGATAGTCCGGATACAGAAGATGAAGTTAAGCAGAAAAGGGTTATTAAACCTAGGCCCTTGAATATGCAGGACTTGAAAGAGGCAAAGAATCAAGTAAGACTGTTTTATAATTTTATTAGATTTAATGAATTAACTGGAACGAATTGTATGGGGAGGGCGGTTCAAGGAAGCAGCAACAACTATCCTACTTCCTCTAATACCGTCGAGGCAACAAATATTTATTTATTTGCATTGTTGTGTCAAAGTTGCTGTATCACTGCTCTCAACAATATCTTCGCTATAAGCACCGCACCGTTGACCTTCCAATCAAACAATGCCAACCTCAAAACTCTTCTTTCAAAACCTCTCTCCGCCGCCACAATGCCCACGCCGGCGAGACTCGCCATCCTCACCATCTTCTTCCTTTCATTAACCTTCTCATCTCGGTCCTTTGACACCTGCAGCCAAACAAAAATTCGTGACCCTCAGAGCCTTCGGTGCGATCAGATCACGGTGGTGATGAACGGATTCTCGGAAGAGCGGATCCCTCTGCTCCAATCCCTAGCAACGGCGTACTCCCTGTCGACACTGGTCTCGTCAGTGCTCGTGCTCTGGGGCAACCCCTCCACACCGCTACGTGTCCTGCAGCAATTGGCCCGCAACCTCAGCTCCTCCTCTTCCGAGGCCAGCATCACCCTCCTCCCCCAACCGTCGAGCAGCCTCAACCTCCGGTTTCTCCCCCGCCCAAACCACATCGAAACGAAGGCCGTTTTGATCTGCGATGATGACGTAGAGGTCCACCCTCGAACCCTGGAGTTCGCGTTCCGCATCTGGTCTTCCAACCAAGACCGCATAGTGGGGCTCTTCGCCCGCTCCCACGACTTCGACCTGAACCGGAAGGAATGGGTGTACACGGTTCACCCGGACCGGTTCTCAATCATGCTCACCAAGTTCATGCTCCTCAAGAGCGAGTATCTCTACCGTTACACGTGCGGTGGCGGAGAGAAGATGGCCTCGATGAGGAGAATGGTTGATTCGGTGCGGAACTGCGAGGATATACTCATGAACATAGTGGTGTCGGAGGTAGCGAAGGTGGGGCCGGTGTTGGTCGGGGCGAGGAGAGTGAGGGATTACGGTGACGCCAGGAATGATGAAGGCGGGGAAGGATACGGTAGCGGTGGGTTGAGTGGTCGGAAAGGGGAGCATAGGAGGCGGAGAGGGTGGTGCATAACAGAGTTTCATAGGGTACTGGGAATGATGCCGTTGAGATACAATTATGGGAAGGTGGTTGATTCCGTTGGGGAACAGGCCCTCTGTAACAAGCGGGGCAAACTCGTCTTTTGCGATCACTCCTTCATGGATAATTAA 3693 0.463 MEQKSLLISALSVGVGVGVGIGLASGQSLGSTWGATSSSSSNSNAITPMKLEQEMLKLVIDGGDSNITFDNFPYYLSEQTKVLLISAAYVHLKHADISKYTRNLAPASRTILLSGPAVQANLNFLHFHGFKELYQQVYAKALAHYFKAKLLLLDLTDFSLKIQSRYGSSANKESASFKRSTSESTLERLSDMFGSFSIFSQREEPKGKIQRQSSAMDLRSMGTEGSCNPPKIRRNVSASANISSLALQSNSSNSAPLKRTTSWSFDEKLLILTLYKVLLFVSKTNPIVLYLRDVDKLLHRSTRIFNLFQKMLSKLSGPILILGSRVLDADNDFQEVDDRLSLLFPYNLVIRPPEDESHLVSWKSRFEEDMKMIQVQDNKNHIMEVLAANDLDCDDLDSVCVADTMVLSNYIEEIVVSAISYHLMNNKDPEYRNGKLVIPCNSLSRALSIFEEGKFSEKDTLKLEAQAVKSEKKEEPAMKREAKSENPVPVKKAEAEISTSVVKAEGENSAPAPKVEVPPDNEFEKRIRPAVIPANEIGVTFSDIGALDETKESLQELVMLPLRRPDLFKGGLLKPCRGILLFGPPGTGKTMLAKAIANEAGASFINVSMSTITSKWFGEDEKNVRALFTLAAKVSPTIIFVDEVDSMLGQRSRVGEHEAMRKIKNEFMTHWDGLMTKPGERILVLAATNRPFDLDEAIIRRFERRIMVGLPSVENREKILKTLLAKEKVDEDLDLKELATMTEGYSGSDLKNLCITAAYRPVRELIQQERLKTLEKQKGSQGDSPDTEDEVKQKRVIKPRPLNMQDLKEAKNQVRLFYNFIRFNELTGTNCMGRAVQGSSNNYPTSSNTVEATNIYLFALLCQSCCITALNNIFAISTAPLTFQSNNANLKTLLSKPLSAATMPTPARLAILTIFFLSLTFSSRSFDTCSQTKIRDPQSLRCDQITVVMNGFSEERIPLLQSLATAYSLSTLVSSVLVLWGNPSTPLRVLQQLARNLSSSSSEASITLLPQPSSSLNLRFLPRPNHIETKAVLICDDDVEVHPRTLEFAFRIWSSNQDRIVGLFARSHDFDLNRKEWVYTVHPDRFSIMLTKFMLLKSEYLYRYTCGGGEKMASMRRMVDSVRNCEDILMNIVVSEVAKVGPVLVGARRVRDYGDARNDEGGEGYGSGGLSGRKGEHRRRRGWCITEFHRVLGMMPLRYNYGKVVDSVGEQALCNKRGKLVFCDHSFMDN* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2407 1230 Pfam Glycosyl transferase family 64 domain 945 1207 IPR015338 GO:0016021|GO:0016757
Amo05g2407 1230 Pfam ATPase family associated with various cellular activities (AAA) 579 709 IPR003959 GO:0005524|GO:0016887
Amo05g2407 1230 Gene3D - 538 710 IPR027417 -
Amo05g2407 1230 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 1 816 - -
Amo05g2407 1230 SUPERFAMILY Nucleotide-diphospho-sugar transferases 1025 1201 IPR029044 -
Amo05g2407 1230 MobiDBLite consensus disorder prediction 467 491 - -
Amo05g2407 1230 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 1 816 - -
Amo05g2407 1230 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 539 778 IPR027417 -
Amo05g2407 1230 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 941 1219 IPR029044 -
Amo05g2407 1230 CDD AAA 577 710 - -
Amo05g2407 1230 MobiDBLite consensus disorder prediction 467 490 - -
Amo05g2407 1230 MobiDBLite consensus disorder prediction 210 230 - -
Amo05g2407 1230 Pfam AAA+ lid domain 732 774 IPR041569 -
Amo05g2407 1230 ProSitePatterns AAA-protein family signature. 682 701 IPR003960 GO:0005524|GO:0016887
Amo05g2407 1230 MobiDBLite consensus disorder prediction 774 798 - -
Amo05g2407 1230 SMART AAA_5 575 712 IPR003593 -
Amo05g2407 1230 Gene3D - 711 790 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2407 Amo-Chr5 51475165 51480934 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2407 907 1225 Glycosyltransferase AT1G80290 58.642 1.25e-115 362
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2407 - - aip:107643102 1299.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2407 05 51475165 51480934 Amo13g3372 13 111497604 111502374 PCT