Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2397 ATGAGTTCCAAATTGTACCTTAGTTTCTTCATAATTGTCATGATTGGGTGCATTGTTTCCGTGAGTTCACACAAGACGGTACACATTGTAGGAGATAATTTGGGTTGGATTCTGCCCAAATACACTGGTTTCTACAACGACTGGGCCAAGAACAAAAAATTTTGTGTTGGTGACAAACTTTTGTTCAATTACAAACCTGGGTTGAACACGGTGGTGCAGGTTGAGAAAGAGGACTACGATCATTGCTCGATGAAAAAGACTCTGGCTCAATACTTCATGGGGAACACCACTTTGACGTTAAGTAATTGTGGTGACTATTATTTCATCTGCTCCGTTGGCAAGCATTGCGAAGCAAGCCAAAAACTTAAGATCACTGTTACATAA 384 0.4036 MSSKLYLSFFIIVMIGCIVSVSSHKTVHIVGDNLGWILPKYTGFYNDWAKNKKFCVGDKLLFNYKPGLNTVVQVEKEDYDHCSMKKTLAQYFMGNTTLTLSNCGDYYFICSVGKHCEASQKLKITVT* 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2397 127 Gene3D - 25 127 IPR008972 -
Amo05g2397 127 PANTHER BLUE COPPER PROTEIN 3 126 IPR039391 GO:0009055
Amo05g2397 127 ProSiteProfiles Phytocyanin domain profile. 26 127 IPR003245 GO:0009055
Amo05g2397 127 PANTHER PLASTOCYANIN-LIKE DOMAIN PROTEIN 3 126 - -
Amo05g2397 127 ProSitePatterns Type-1 copper (blue) proteins signature. 104 120 IPR028871 -
Amo05g2397 127 Pfam Plastocyanin-like domain 43 119 IPR003245 GO:0009055
Amo05g2397 127 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 17 - -
Amo05g2397 127 SUPERFAMILY Cupredoxins 26 126 IPR008972 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2397 Amo-Chr5 51362705 51363178 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2397 2 126 Phytocyanin Superfamily AT4G31840 33.333 2.01e-22 85.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2397 - - gmx:102660389 160.614