Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2380 ATGGAGTGTGAAGGGAGTTGGGAGAAGAGCGAATTGAAAAATGAGCTTGTTCAAGGGATGGAGGTAGCAAGAAAGCTTAAGGCAGAGTTAGAGTTAGAATCTAGTGCTGACAATAGGGACTTGCTGGTGGACAAAATATTATCTTCTTATGACAAAGCTCTATTGATCCTAAGATGGAATGGATCAGTTTCCAAGCCCCACACATTGCATCCATCAACTAAAACCTCCCCACCACAGTCCCCTCTACCCCACAATCATCAACAGGAACTTAAACACTCTTCACAGAAAAGAAAAATGATTTCTAAATGGGTGAATCAGGTTAAGGTGAATTCTGAGAATGGCTTTGAAGGATCCCATGAAGATGGGTACAGCTGGAGAAAATATGGACAGAAAGACATCCTTGGTTCCAAATATCCAAGAAGTTACTATAGGTGCACCTTCCGCAACACTAAGGATTGCTGGGCAACCAAGCAAGTGCAGAGATCAGAGGATGATCCCAATATATTTGAAATAACTTATAAAGGAAGCCATACCTGTTCCAAGGGGAAGAAGAATGCTGCTATGTCAGCAAAGTCACCAGACATACAAGAACCACAAGAACACCATACAAACTTCCAAAACATGTTGACAGTCACTGTGGCTAAGCCGGGAAACGAAGAAATGGCATGTCCTTTCACTTCCCCATCGACCTCCTCTGGATGCAGGACACAAGAAAACCAGAACTTCCTTCCTTCAATTCTAGAGAATAATCCCTTCTTGGGCAGTCTTTCACAAACACATTTGTTATTACCAAACACACCAGAATCAAACTATTTTCCATCTCCTTTCTGCGCAAATGAGCTTGATGGGATCTACAGCAATCGATGCTTGGAATTCGATGTTTCTGAGATCATTTCCGCCCATACATCAGCCACCAATCCTCCAATTTTCGATTTTGATTTCTCGCTTGATCCACTGGAACTTGGCCAAAATTTCCATTTCAATGCCTCCAGATTTCCTCACTAA 1005 0.4229 MECEGSWEKSELKNELVQGMEVARKLKAELELESSADNRDLLVDKILSSYDKALLILRWNGSVSKPHTLHPSTKTSPPQSPLPHNHQQELKHSSQKRKMISKWVNQVKVNSENGFEGSHEDGYSWRKYGQKDILGSKYPRSYYRCTFRNTKDCWATKQVQRSEDDPNIFEITYKGSHTCSKGKKNAAMSAKSPDIQEPQEHHTNFQNMLTVTVAKPGNEEMACPFTSPSTSSGCRTQENQNFLPSILENNPFLGSLSQTHLLLPNTPESNYFPSPFCANELDGIYSNRCLEFDVSEIISAHTSATNPPIFDFDFSLDPLELGQNFHFNASRFPH* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2380 334 SUPERFAMILY WRKY DNA-binding domain 118 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo05g2380 334 ProSiteProfiles WRKY domain profile. 120 177 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g2380 334 Pfam WRKY DNA -binding domain 120 179 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g2380 334 SMART WRKY_cls 119 181 IPR003657 GO:0003700|GO:0006355|GO:0043565
Amo05g2380 334 Coils Coil 9 33 - -
Amo05g2380 334 MobiDBLite consensus disorder prediction 66 88 - -
Amo05g2380 334 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 1 330 IPR044810 GO:0003700
Amo05g2380 334 Gene3D WRKY domain 103 182 IPR036576 GO:0003700|GO:0006355|GO:0043565
Amo05g2380 334 PANTHER WRKY TRANSCRIPTION FACTOR 41-RELATED 1 330 - -
Amo05g2380 334 MobiDBLite consensus disorder prediction 66 96 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2380 Amo-Chr5 51076375 51077592 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2380 7 318 WRKY Transcription Factor Family AT4G11070 37.931 1.04e-57 186
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Amo05g2380 WRKY 4.5e-27 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2380 - - adu:107488322 698.353
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2380 05 51076375 51077592 Amo13g3295 13 105378051 105381486 PCT
Amo05g2380 05 51076375 51077592 Amo03g2312 03 96719857 96721157 PCT