Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2379 ATGGAGGAGCGCCGTTCCCAGAAGAATAAGGCAAAGCTCTCTACAACTGCAAGTACTAACTCTGAAGAAGTGAGTAGTAATGAGTGGGAATTTATAGAAATGAGCGAGCAAGAGGAGGATCTTATTCGCAGGATGTATGGCCTTGTTGGCGATAGGTGGGATTTGATAGCCGGGCGCATTCCAGGTCGTAAAGCAGAAGAAATTGAGAGATTCTGGATTATGAGACATGGCGATGCTTTTTCTCTTAGAAGAACAAATAATCAACAACAACAACAACGTAAACCCAATAACTCGTGA 297 0.431 MEERRSQKNKAKLSTTASTNSEEVSSNEWEFIEMSEQEEDLIRRMYGLVGDRWDLIAGRIPGRKAEEIERFWIMRHGDAFSLRRTNNQQQQQRKPNNS* 99
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2379 98 Gene3D - 34 98 - -
Amo05g2379 98 MobiDBLite consensus disorder prediction 1 30 - -
Amo05g2379 98 MobiDBLite consensus disorder prediction 11 30 - -
Amo05g2379 98 CDD SANT 33 72 IPR001005 -
Amo05g2379 98 Pfam Myb-like DNA-binding domain 34 73 IPR001005 -
Amo05g2379 98 SMART sant 30 78 IPR001005 -
Amo05g2379 98 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 6 90 - -
Amo05g2379 98 PANTHER MYB-LIKE TRANSCRIPTION FACTOR ETC3 6 90 - -
Amo05g2379 98 SUPERFAMILY Homeodomain-like 35 73 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2379 Amo-Chr5 51063941 51066063 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2379 34 72 MYB Transcription Factor Family AT5G52600 58.974 9.23e-12 56.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g2379 Myb_DNA-binding 1.5e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2379 K09422 - gmx:100814431 130.183