Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2377 ATGATGAACGGAATGCAAGAAAGAACCACACAGTTCGAACTCCACGACGGTGCCTATATGGATATCGGTTCCACCCTATCAAACCTCATACTGTCAAGCAGCACAAACACGCTGGACTCAATTTTCTGCCATTGTCCACAACCCAATCCAACTTGCATTCCTAACTCCATGATAGCATCTTCAGGTTTCGAACCTCTGGGCTCCTCCGTATACCTTCGCCAGAGAGACATCCTTGAAAAATTCTACCAGGAAAACAGGGTCAACAACAGGCCTTTTGTGCCAACATCCATGGTCACTCCATCAATGACCAATTCTTCTTTGACTTCTTCTTCTTCTTCCTTCATGAACCCCTGCAAGAAGAAGCTGTACAGAGGAGTGAGGCAGAGGCACTGGGGAAAATGGGTGGCAGAGATTAGACTCCCACAAAACAGAATGAGAGTGTGGCTGGGAACCTATGACACTGCAGAAGCTGCTGCTTATGCCTATGATCGTGCTGCTTACAAACTCCGTGGAGAATACGCGCGCTTGAATTTCCCCAACCTGAAGGACCCAACCAAGTTGGGATTCGGAGACTCAACCAAGTTGAATGCTCTCAAGACAACCGTGGATGCAAAGATTCAAGCCATATGCCAGAAGGTCAAGAGGGAGAGAGCCAAGAAGAATGCAGCCAGGAAACTCAAATCAAATGGCGGCGGCGACACGGCTAGCCACGGTGGTGGACAGAGCGAGACATCAAAATCGCAAAAGAACGACAAGATCAGCTCAGCTTCTTGTTCTTCTTCTTCGTCACTGTCGCCTCCTCGGCCTGCTAATTATGATGATTGGGCAAAGGAGTTGCTCTCGCCGGTGTCCGTTTCGAGGGAATGTGGCATGTTGCTGACAGATGATTCAATGGAATTCGATGATTGTTCCCTTGCAAGGATGCCATCCTTCGACCCTGAGTTGATTTGGGAAGTTCTGGCCAATTAG 969 0.4861 MMNGMQERTTQFELHDGAYMDIGSTLSNLILSSSTNTLDSIFCHCPQPNPTCIPNSMIASSGFEPLGSSVYLRQRDILEKFYQENRVNNRPFVPTSMVTPSMTNSSLTSSSSSFMNPCKKKLYRGVRQRHWGKWVAEIRLPQNRMRVWLGTYDTAEAAAYAYDRAAYKLRGEYARLNFPNLKDPTKLGFGDSTKLNALKTTVDAKIQAICQKVKRERAKKNAARKLKSNGGGDTASHGGGQSETSKSQKNDKISSASCSSSSSLSPPRPANYDDWAKELLSPVSVSRECGMLLTDDSMEFDDCSLARMPSFDPELIWEVLAN* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2377 322 MobiDBLite consensus disorder prediction 234 268 - -
Amo05g2377 322 Gene3D AP2/ERF domain 122 180 IPR036955 GO:0003700|GO:0006355
Amo05g2377 322 ProSiteProfiles AP2/ERF domain profile. 122 179 IPR001471 GO:0003700|GO:0006355
Amo05g2377 322 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 21 322 - -
Amo05g2377 322 CDD AP2 121 181 IPR001471 GO:0003700|GO:0006355
Amo05g2377 322 SUPERFAMILY DNA-binding domain 122 179 IPR016177 GO:0003677
Amo05g2377 322 SMART rav1_2 122 185 IPR001471 GO:0003700|GO:0006355
Amo05g2377 322 PRINTS Ethylene responsive element binding protein signature 123 134 IPR001471 GO:0003700|GO:0006355
Amo05g2377 322 PRINTS Ethylene responsive element binding protein signature 145 161 IPR001471 GO:0003700|GO:0006355
Amo05g2377 322 Pfam AP2 domain 123 172 IPR001471 GO:0003700|GO:0006355
Amo05g2377 322 MobiDBLite consensus disorder prediction 220 269 - -
Amo05g2377 322 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF061 21 322 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2377 Amo-Chr5 50897896 50899635 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2377 21 322 AP2-EREBP Transcription Factor Family AT1G64380 47.546 2.65e-67 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Amo05g2377 AP2 6.7e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2377 - - lja:Lj0g3v0046879.1 335.495