Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2376 ATGGATAGCACCGCCGAAACAAAATCAAAAAAAATCGACCGCCGCTACGATACTTTGGGAAAGAAGAGAAAGCGATCTAGCAGGTTCGCCTCTACCGAGGTAGCTGTCCTTCCTTCCATGGAAGATTCATCATCCTCATCCTCCTCCACCGCTAACAACGCGCCAAAGCAGAACTGCACCGCCGTCGCATCAGCTTCCTATGGTTTAATATCCGTCATAGGCCGACGGAGAGTCATGGAGGACGCCGTCAGAGTGGTCCCCGGTTTCGTGCCGGTGGAAGACCATTCTGGAGGTTACGATTTCTTTGCGGTTTACGACGGTCACGGTGGAAGTATGGTGGCGAATACTTGCCGCGAGAAGCTGCACATGTTGTTGGCGGAGGAAATGAAGGAGGCGAAAGCAGCAGGGCCTTTGGATTGGCATCAAGTGATATGCTCGTGCTTCATGAAGATGGACCAAGAGATTGGAGGTGGCGAGGGCAATGATGACATGGCGGATGGGAACACCATGGGTTCTACTGCGACGGTGCTTGTTGTTGGAAAGGAGGAGATTGTGGTTGGCAACTGCGGAGACTCTAGGGCGGTGCTGTGTCGCGGCGGCGAAGCCTTGCCGCTTTCACGTGATCATAAGCCTGATCGTGAGGATGAGAAAGAGAGAATAGAAGCAGCAGGTGGAAAAGTGATCGATTGGGATGGGAATCGTGTTTTAGGTGTTCTTGCTACATCAAGATCCATAGGGGACCACTACATGAAGCCATTTGTGATAGCTCAACCGGAGATACAGGTGTCCCCCCGAACAGATTCCGATGAGTTTGTGGTGGTAGCAAGTGATGGACTGTGGGATGTGGTGTCTAACAGTTTTGCGTGCCAACTTGTGAGAAGTTGCCTTAGTGGCAAGACCGGCATGACCACATCCGCGGAGGCAGCCGCCACTCTGCTAGCGGAGCTTGCCATGGCTCGTGGTAGCAAAGACAACATCTCTGTCATTGTGGTCCAGCTCAGTAACGCTGCTTCTCCTTCAACTCCTTCAACTTCAGAATAA 1041 0.5226 MDSTAETKSKKIDRRYDTLGKKRKRSSRFASTEVAVLPSMEDSSSSSSSTANNAPKQNCTAVASASYGLISVIGRRRVMEDAVRVVPGFVPVEDHSGGYDFFAVYDGHGGSMVANTCREKLHMLLAEEMKEAKAAGPLDWHQVICSCFMKMDQEIGGGEGNDDMADGNTMGSTATVLVVGKEEIVVGNCGDSRAVLCRGGEALPLSRDHKPDREDEKERIEAAGGKVIDWDGNRVLGVLATSRSIGDHYMKPFVIAQPEIQVSPRTDSDEFVVVASDGLWDVVSNSFACQLVRSCLSGKTGMTTSAEAAATLLAELAMARGSKDNISVIVVQLSNAASPSTPSTSE* 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2376 346 ProSitePatterns PPM-type phosphatase domain signature. 101 109 IPR000222 GO:0043169
Amo05g2376 346 SMART PP2C_4 56 331 IPR001932 -
Amo05g2376 346 ProSiteProfiles PPM-type phosphatase domain profile. 66 333 IPR001932 -
Amo05g2376 346 CDD PP2Cc 66 333 IPR001932 -
Amo05g2376 346 SMART PP2C_SIG_2 78 333 IPR001932 -
Amo05g2376 346 MobiDBLite consensus disorder prediction 1 55 - -
Amo05g2376 346 MobiDBLite consensus disorder prediction 37 55 - -
Amo05g2376 346 Pfam Protein phosphatase 2C 68 326 IPR001932 -
Amo05g2376 346 PANTHER ALPHABET, ISOFORM E-RELATED 30 334 - -
Amo05g2376 346 PANTHER PHOSPHATASE 2C FAMILY PROTEIN 30 334 - -
Amo05g2376 346 SUPERFAMILY PP2C-like 62 335 IPR036457 -
Amo05g2376 346 MobiDBLite consensus disorder prediction 1 29 - -
Amo05g2376 346 Gene3D - 59 338 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2376 Amo-Chr5 50851184 50852675 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2376 67 333 PP2C-type Phosphatase Gene Family AT1G07430 44.304 2.23e-83 258
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2376 K14497 - gmx:100813248 399.823