Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2362 ATGACTACCCCGCAATATTATTCCCTAACACTTGTAGTCTTGATTATTATTATTATTATTGGGTACAGAAGAACAGAGGCTGATGAGGCAAGTGATAATATTAATAACTGTGACACAACCGTTATTGCCTCATGCGGAAACTACACGCTCCCTATTGAATTCCCGTTTTGGATGACCAGTGAAGGCAACAACACACGGTGTGGGTACCGAGGTTTCGAAATCAAGTGTAACAATCAGAAACAACCGTTGCTAAATCTCCCAGAATCCGGTGACTTCGTTGTAAACGGGATCGAGAATGATGAGCAAACAATTCTGATCAACGACCAAGAAAAGTGCCTCCCAAGAAGGATCATGCTCAACCGTGGATTCAGCCTCGCAGATTCCCCTTTCCAATTAGCCGACGGTTTCAGTTACCAGAATTACTCGTTTTACAGCTGTCCATACGACCCAACATCACCGCTCATGATAGAGTGCTTGGGATCCACGCGCAACAACCTCAGCTATTCCGTGTTGGCGGTGTTGTCGTCGCAAGTAACGCGTCAAAGGTTGTTGAATAATTCATCGTCGTGCCACTTTATTACATCCGCTTTGGCACCTGTTCCCAGTTATGTACGGTATGAAGTGTTTTGGATGAGTTACGATGTTGATATACGGTTACGGTGGAATGAACCTGATTGCACGTCTTGTATACAAAGTGGTGGACGCTGTGGCCTCCTACCGAATTCTAACGATGATCATGCTGCTTGTTATGATCTTCCACACCAAGGTCAAGGTCTTTCAAGGAAAGCCAGGTTTGGTCTAACCATAGGCGTGGGAATACCTGGAGTCATTGGCATCATTGGACTAATATGTTTATTGCAGCGCAGAAAGATGAGGCGAGATCAGCGACAACAGTCATCAAGAACACAACCGGAATTTTCTATCATGATTGTCCCTCCCCCTCCAGCTGTCCTAATGGGCCTTGATGGCCCATCAATAGAAAGATATCCGAAAACTGAGGTTGGTGAGAATGGGCAATTGCCTAGGCCCAATGATACCATTTGCTCAATATGTCTCTCTGAATACAGTCCCAAAGAGGTGCTGAGGACCATAACAGAGTGCCAACACTATTTTCACGTTGATTGCATTGATGGGTGGCTGAAGATGAATGCTACTTGCCCTTTGTGTAGAAAATTGCCCGCAAGATCAAATTCCAATTACGACTCCTCTTTGCCTTTCCCTCCATCTTCCTCCTCCTAA 1239 0.452 MTTPQYYSLTLVVLIIIIIIGYRRTEADEASDNINNCDTTVIASCGNYTLPIEFPFWMTSEGNNTRCGYRGFEIKCNNQKQPLLNLPESGDFVVNGIENDEQTILINDQEKCLPRRIMLNRGFSLADSPFQLADGFSYQNYSFYSCPYDPTSPLMIECLGSTRNNLSYSVLAVLSSQVTRQRLLNNSSSCHFITSALAPVPSYVRYEVFWMSYDVDIRLRWNEPDCTSCIQSGGRCGLLPNSNDDHAACYDLPHQGQGLSRKARFGLTIGVGIPGVIGIIGLICLLQRRKMRRDQRQQSSRTQPEFSIMIVPPPPAVLMGLDGPSIERYPKTEVGENGQLPRPNDTICSICLSEYSPKEVLRTITECQHYFHVDCIDGWLKMNATCPLCRKLPARSNSNYDSSLPFPPSSSS* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2362 412 Pfam Ring finger domain 347 390 IPR001841 -
Amo05g2362 412 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 33 410 - -
Amo05g2362 412 SUPERFAMILY RING/U-box 341 393 - -
Amo05g2362 412 PANTHER RING-H2 FINGER PROTEIN ATL20-LIKE 33 410 - -
Amo05g2362 412 ProSiteProfiles Zinc finger RING-type profile. 348 390 IPR001841 -
Amo05g2362 412 SMART ring_2 348 389 IPR001841 -
Amo05g2362 412 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 319 394 IPR013083 -
Amo05g2362 412 Pfam Wall-associated receptor kinase galacturonan-binding 44 108 IPR025287 GO:0030247
Amo05g2362 412 CDD RING-H2_PA-TM-RING 348 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2362 Amo-Chr5 50277057 50279473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2362 44 394 C3H Transcription Factor Family AT2G25410 32.222 2.58e-50 172
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2362 - - adu:107488400 788.104