Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2350 GTTTTGAATATACTTAAATATGTTAGTATATTTATAGTAGAAAGATACAGGTCAGGTGGCATGTTATTAGAGTATGGTAATTTCCTAAGGAATTGGCAATTTCTAAGAAGAAAAATGGAATTTAGCTTAGGGTATGTCCTAAAAATGCCACCTAAGAATCCACAAGTAGAGATAAATGTGCAATCTACTTTTGGAGAAGAAGGGTCATCTTCTGTAACTTCGTCACCCCTTCAATTCTTCTCGATGATGTCACTGTCACCTAGCATAGGATCTCCATACACATGGCTAAGAGAGCTTAAATCAGAGGAAAGGGGATTGGCCTTGATCCATTTGTTGCTGACTTGTGCAAACCATGTGGCTGCTGGTAGTCTTGAGAATGCAAATGTAATGCTTGATCAAATTTCCCAGTTAGCTTCCCCTGATGGCGACACTATGCAACGAATCGCCGCATACTTCAATGAAGCGCTGGCCGATAGGATACTCAAGACATGGCCTGGTCTCCACAGGGCCCTCAATTCCACCAGGATTGTCATGGTTTCAGAAGAAATTCTTGTCCAAAAGCTCTTTCTGGAGCTTTTCCCGTTCTTGAAGGTGTCATATATACTGACAAATCAGGCTATTGTTGAAGCAATGGAAGGAGAGAAAATGGTGCACATAATTGATCTCAATGCTGCCGAACCTGCGCAATGGATTGCTCTCCTCCAAGTTTTTAGCGCACGCCCTGAAGGCCCTCCTCATTTGAGAATTACCGGGGTTCATCACCAAAAAGAGATTCTAGAGCAGATGGCTCACAAGCTTACTGAAGAAGCAGAAAAGTTGGATATCCCCTTCCAATTCCATCCTGTAATCAGCAAATTAGAGAATCTTGATTTTGACAAGCTTCGGGTGAAAACCGGAGAAGCATTAGCAATAAGTTCTATTCTGCAATTGCATTCCCTTTTAGGCCTGGATGATGAGGCCTTGCGAAGAAGATCTCCTCTTTTGTCGAAAAACTCAAACGGAATTCACCTGCAGAAAGCCTTGCTGATGAATCAAAGCACATTAGGTGATTTGCTTGAGAAAGATACACTGAATGGCTACAGTCCAAGTCCTGACTCGGCCTCATCCTCGCCGGTTTCTTTAACAGCTTCAATGACTGCAGAGAGCTTTCTCAATGCCCTATGGGGATTATCACCAAAAGTGATGATTGTGACAGAACAAGACTCTAATCATAATGGTTCAACCCTGATGGAGAGAGTACTAGAAGCTCTGTATTCTTATGCGGCATTGTTCGATTGTTTGGAATCCACTGTCTCTAGGACATCAGTGGAGAGATTAAAGGTGGAGAAGATGCTTTTTGGTGAAGAAATCAAGAATATCATTGCTTGTGAGGGAGCTGAAAGAAGGGAAAGACATGAAAAGCTAGATAAGTGGATCCAGAGACTGGATTTGTCCGGGTTTGGCAATGTGCCGTTGAGCTATTACGGCATGTTGCAGGCGCGGAGATTCCTGCAGAGCTGTGGTTGTGAGGGATACAAGATGAGGGAGGAGAATGGTTGTCTAGTAATTTGCTGGCAGGATAGACCTTTGTTTTCAATATCTGCTTGGAGATCTAGGAAGTGA 1602 0.4301 VLNILKYVSIFIVERYRSGGMLLEYGNFLRNWQFLRRKMEFSLGYVLKMPPKNPQVEINVQSTFGEEGSSSVTSSPLQFFSMMSLSPSIGSPYTWLRELKSEERGLALIHLLLTCANHVAAGSLENANVMLDQISQLASPDGDTMQRIAAYFNEALADRILKTWPGLHRALNSTRIVMVSEEILVQKLFLELFPFLKVSYILTNQAIVEAMEGEKMVHIIDLNAAEPAQWIALLQVFSARPEGPPHLRITGVHHQKEILEQMAHKLTEEAEKLDIPFQFHPVISKLENLDFDKLRVKTGEALAISSILQLHSLLGLDDEALRRRSPLLSKNSNGIHLQKALLMNQSTLGDLLEKDTLNGYSPSPDSASSSPVSLTASMTAESFLNALWGLSPKVMIVTEQDSNHNGSTLMERVLEALYSYAALFDCLESTVSRTSVERLKVEKMLFGEEIKNIIACEGAERRERHEKLDKWIQRLDLSGFGNVPLSYYGMLQARRFLQSCGCEGYKMREENGCLVICWQDRPLFSISAWRSRK* 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2350 533 Pfam GRAS domain family 108 530 IPR005202 -
Amo05g2350 533 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 66 532 IPR005202 -
Amo05g2350 533 ProSiteProfiles GRAS family profile. 99 530 IPR005202 -
Amo05g2350 533 PANTHER SCARECROW-LIKE PROTEIN 3 66 532 IPR030008 GO:0003700|GO:0005634|GO:0009739
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2350 Amo-Chr5 50158818 50162170 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2350 66 533 GRAS Transcription Factor Family AT1G50420 68.973 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Amo05g2350 GRAS 6.5e-140 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2350 - - tcc:18589932 777.704