Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2340 ATGGAGGGGACCGAGGAAGACAACCTCTTGGCATCAACTATGTATTGCTATGGTAATGGATTGTTTCAGTCAGACGATCAAAGAGATGTCATCTTTCTCGACGGAATAGGTTCATTTGGTGCAATTGATTTTGATGCGTTGCGAGATGAGGAGATTATGATGATAGAGTTTGTCGATTTGAAAACTGCTTACGACTTCTATAACGAGTACGGTCGAATTAAGGGGTTTTCCATACGCCGGTCGAAGGTAGGGCGCTGCAAGAAGGCAGGATCTGAGGGCAACATTATATGGCAAATTTTTGTATGCTCGCGACAAGGTGAACGAGATGCAAAGCATGTTCACAGAAATGATAGGAAGATGGATCCTAGACCAGTAACGCGATGCGGGTGTAATGCGCGGATAAAAGTTCATGTTGACTCGAGGAACGAGAGATGGTATGTTGACTTCTTCTCCGATGAACATAACRATGACATGTTGGAGGCAAGGTTTAGGGGAATGATYRYCTCTGGCCTTCGAGTTCCGACAATATTTCGGGCTTTTGCAAACCAAAATGGTGGATTCGAGATGGTTGGGTTTCAGGTGAAAGACATCTATAATGCAATTGAGAAGCAAAGAAGAGCTGGAGCAAGCGACACAGATAATGCACTCAAGTATTTACAAATGTTGAAGAGGCGTGACCCCTCTAGCAATGTCAGAGTAGTTTCTTCGAAGAAGACAAGCACGTGTACATTGTTTGAGGTGGCCATGTATTGCCAAGGTAGTCTTATACTGGGTCGTTGGACAAAGAAGGCAAAACAACCACCGATAAATAACCATGTTTTTAGTGGAGAGATTCCTGATGCAGCCTATATGAGTATGCATGCGGCAATGCTCGATGACTGTAGAGAACTGGTAAAGCTTTCTTGTAGTAACTTTGAGGATTACTTCGAGGTGAAGACCAAAATAGCTAATGAACGAGACGCGCTAAGAGAAAAGATTCAAAAAAGGTTGGCGACCACTGCTGAGGGCGAGGGCGATGATGCGTCCATACACGATCCTCCAAGAGCCAGATATAAAGGGTGTGGTCGTCATGTTGTGACGACTCGTGGGAGGTACCGGCGTGTCCAATGTTGCAGAAAGTGTGGCAAGGCTGGCCATAACGCTCGTAGATGCGCAATCGGGAATGGTGAGGACACCACGCATGAATTAGATGCTTTTGGATCATTGCACAACATGGACGAATCACAAGAAGCCGAGGCTTCACAACAGATGGAGTACGATGATCTGAGCTTCTAA 1275 0.4525 MEGTEEDNLLASTMYCYGNGLFQSDDQRDVIFLDGIGSFGAIDFDALRDEEIMMIEFVDLKTAYDFYNEYGRIKGFSIRRSKVGRCKKAGSEGNIIWQIFVCSRQGERDAKHVHRNDRKMDPRPVTRCGCNARIKVHVDSRNERWYVDFFSDEHNXDMLEARFRGMIXSGLRVPTIFRAFANQNGGFEMVGFQVKDIYNAIEKQRRAGASDTDNALKYLQMLKRRDPSSNVRVVSSKKTSTCTLFEVAMYCQGSLILGRWTKKAKQPPINNHVFSGEIPDAAYMSMHAAMLDDCRELVKLSCSNFEDYFEVKTKIANERDALREKIQKRLATTAEGEGDDASIHDPPRARYKGCGRHVVTTRGRYRRVQCCRKCGKAGHNARRCAIGNGEDTTHELDAFGSLHNMDESQEAEASQQMEYDDLSF* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2340 424 Pfam FAR1 DNA-binding domain 65 158 IPR004330 -
Amo05g2340 424 MobiDBLite consensus disorder prediction 403 424 - -
Amo05g2340 424 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN 48 172 - -
Amo05g2340 424 ProSiteProfiles Zinc finger CCHC-type profile. 371 384 IPR001878 GO:0003676|GO:0008270
Amo05g2340 424 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 48 172 - -
Amo05g2340 424 MobiDBLite consensus disorder prediction 407 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2340 Amo-Chr5 49963945 49966411 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Amo05g2340 FAR1 1.5e-18 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2340 - - ahf:112803492 408.297