Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2336 ATGGCAGAAGAGGAATCAAAAGCATTGAACTTCATACCAGAGGTTATACTCAAGAAGCGAAAAAGCAACGAAGCATGGGCTCTCAGGAAAAAGGCTCAGTTAGAGCGCTCCAACTTCCAATCTAACAAGAGCAAGGACGCTACCATCAAAAAGCCCGAGGATTTCGTTATTCAATATCGCAACATGGAGCTGGACCTTATTAGAGTGAAGCGCAGAGTAAAGAGGAAACTTCCACACCTCAACTCAGACTCCAAGTCCTTACTTGTCATTCGGATTCACGGGTCTGTACCTCTCTCTGTCTCTCCTTTTTGGTTATGTGAATACGACTTATCAAGTGTTTGTATCATTTTTAGGAAAAACGATATGCATCCGAAAACAAGAAAGAATTTGTACAGCTTGGGGTTGAGAAGAGTATTCAGTGCTGTCTTTTTGAAGCCATCAGATGGAGTGTTGGCCAAGTTGCAGAGGGTGGAACCATTTGTTACCTATGGATACCCAAATCTTAAGAGCATAAAGGAGCTAATCTACAAGAAGGGGCACATGAAAATAGAGAAGCGGAAAGTTCCGTTGACAGATAATAACATTATTGAGCAGGAATTAGGGAAGTATGGTATTGTATGCATAGAAGACATGGTGCATCAGATCTATAATGTTGGTCCACACTTTAAAGAAGTTATTCGACTTATGTGGCCCTTTGAACTCAACAAACCAGTAGGAGGGTTGACAGGATCAAAAACCCTTTTCAAGGATGGTGGAGACTCTGGAAATCGGGAGGATCTCATCAACGAATTAGTCTCTAAAATGAATTAA 810 0.4136 MAEEESKALNFIPEVILKKRKSNEAWALRKKAQLERSNFQSNKSKDATIKKPEDFVIQYRNMELDLIRVKRRVKRKLPHLNSDSKSLLVIRIHGSVPLSVSPFWLCEYDLSSVCIIFRKNDMHPKTRKNLYSLGLRRVFSAVFLKPSDGVLAKLQRVEPFVTYGYPNLKSIKELIYKKGHMKIEKRKVPLTDNNIIEQELGKYGIVCIEDMVHQIYNVGPHFKEVIRLMWPFELNKPVGGLTGSKTLFKDGGDSGNREDLINELVSKMN* 270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2336 269 CDD Ribosomal_L7_archeal_euk 119 269 IPR035808 -
Amo05g2336 269 Pfam Ribosomal L30 N-terminal domain 12 76 IPR012988 -
Amo05g2336 269 PANTHER 60S RIBOSOMAL PROTEIN L7 115 269 IPR039699 -
Amo05g2336 269 Gene3D - 112 213 IPR036919 -
Amo05g2336 269 Gene3D - 214 269 IPR036919 -
Amo05g2336 269 SUPERFAMILY Ribosomal protein L30p/L7e 118 269 IPR036919 -
Amo05g2336 269 PANTHER 60S RIBOSOMAL PROTEIN L7-1 115 269 - -
Amo05g2336 269 PANTHER 60S RIBOSOMAL PROTEIN L7-1 3 96 - -
Amo05g2336 269 Pfam Ribosomal protein L30p/L7e 120 161 IPR016082 -
Amo05g2336 269 PANTHER 60S RIBOSOMAL PROTEIN L7 3 96 IPR039699 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2336 Amo-Chr5 49916808 49919075 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2336 1 269 Cytoplasmic Ribosomal Protein Gene Family AT1G80750 49.817 9.84e-82 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2336 K02937 - gmx:100500005 358.607