Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2286 ATGGCGGCATCGCGGCGGTTGCGGGAACTGCAATCCCAGGCGGCGAACAAGATCTGCGTCGACTGCTCTCAGAAGAACCCACAGTGGGCCTCCGTCTCCTACGGCGTATTCATGTGCCTCGAGTGCTCCGGCAAGCACCGCGGCCTWGGCGTCCACATCTCCTTCGTCAGATCCGTCACCATGGACTCCTGGTCCGAAATCCAGATCAAGAAGATGGAGGCTGGCGGCAACGACGCCCTCAACGCCTTCCTCTCTCAGTACGGTATTCCAAAGGAAACTGATATTGTCACAAAGTACAACACCAACGCCGCCAAAATCTACCGCGACCGCATCCAGGCCCTCGCCGAAGGCCGTCCCTGGCGCGATCCTCCCGTTGTTAAGGAGGATCTCCGCTCCTCTGCCGGGAAACCTCCCTTGTCGCACACCGGCGGTGGCGGTGGTGGTGGAGGTTGGGATAGCTGGGATAACGATGACGGTTTTGGATCTCGCAATGATATWCGGCGGAATCAGTCGACTGGAGATGTTAGACGGTTCTCTGGTGGCGGCGCCGGTGTAGGTGGTGTGCCGGCGAGGTCGAAATCGACGGAGAATATGTACACGCAGTCGGAATTGGAGGCCTCCGCCGCGAACAAGGAGAGCTTCTTTGCTCGGAAGATGGCGGAGAATGACACGAGGCCTGAGGGGCTCCCGCCYTCGCAGGGCGGAAAGTACGTCGGGTTCGGATCGAGCCCTGCCCCTTCWCAGAGGAACATYAACCCRCAAAACGACTATCTCTCTGTCGTTTCGCAGGGGATTGGTAAATTATCACTGGTTGCTGCATCTGCCGCTCAATCTGCTGCTAGTGTTGTTCAGGCAAGCACCAAGGAAATCACTGCTAAGGTAAAGGATGGTGGGTATGATCACAAGGTCAATGAAACTGTCAATGTTGTTACTCAGAAGACATCTGAGATTGGCCAAAGGACATGGGGCATTATGAAAGGTGTCATGGCATTGGCTACACAGAAGGTGGAGGAGTTCGCTAGAGATAACCCAAATTGGAAGCCTGAAAATTGGCAAGCAAATGATATSGATAGAAATGGTTCCTATCAAGAGTACAATCAAGAGAATAGAGGCTGGAATTCTTCTTCTACCAGGGGAGGACAACCATCATCYGGTAGTCAATCTAATAAGTCTAGTTCTTGGGATGATTGGGATGAGCAAGATTCTAGGAAGCAAGTACCAGCTCGTCCATCTTCACGTGAACAATATGCTGATACTAGGAAGCAGGGACCAGCTAAGGTATCAGCTTCTCCATCACCAGTTGCACAGTATGGTGGTACTCACAACACAAGCTCTTGGGATGATTGGGACCAAAAAGATACTAGGAAGCAAGAACCAGCTAAAGTATCTGCTTCTCCGTCATCAGTTGGACAGTATGGAGGTACTCAAAACACCCACACCAGCTCCTGGGATGATTGGGACCAAAAAGATACTAGGAAGGAAGAAGCAGCTAAAGGATCAACTCCTCAGAAAAGTGATGGTTGGGCTGGCTGGGATGATTCTAAAGATGATGGATTTGATAATTTCTATGGGAGTTCAGCTAATAATAAAGCTGCTGGTCATAATGGAAAGGCAGATTCAGCCTGGACGGGAGGAGGCTTTCTCTGA 1647 0.5149 MAASRRLRELQSQAANKICVDCSQKNPQWASVSYGVFMCLECSGKHRGLGVHISFVRSVTMDSWSEIQIKKMEAGGNDALNAFLSQYGIPKETDIVTKYNTNAAKIYRDRIQALAEGRPWRDPPVVKEDLRSSAGKPPLSHTGGGGGGGGWDSWDNDDGFGSRNDIRRNQSTGDVRRFSGGGAGVGGVPARSKSTENMYTQSELEASAANKESFFARKMAENDTRPEGLPPSQGGKYVGFGSSPAPSQRNINPQNDYLSVVSQGIGKLSLVAASAAQSAASVVQASTKEITAKVKDGGYDHKVNETVNVVTQKTSEIGQRTWGIMKGVMALATQKVEEFARDNPNWKPENWQANDXDRNGSYQEYNQENRGWNSSSTRGGQPSSGSQSNKSSSWDDWDEQDSRKQVPARPSSREQYADTRKQGPAKVSASPSPVAQYGGTHNTSSWDDWDQKDTRKQEPAKVSASPSSVGQYGGTQNTHTSSWDDWDQKDTRKEEAAKGSTPQKSDGWAGWDDSKDDGFDNFYGSSANNKAAGHNGKADSAWTGGGFL* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2286 548 MobiDBLite consensus disorder prediction 394 420 - -
Amo05g2286 548 SUPERFAMILY ArfGap/RecO-like zinc finger 5 115 IPR037278 -
Amo05g2286 548 MobiDBLite consensus disorder prediction 460 482 - -
Amo05g2286 548 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 413 - -
Amo05g2286 548 CDD ArfGap_ArfGap1 3 117 - -
Amo05g2286 548 MobiDBLite consensus disorder prediction 347 393 - -
Amo05g2286 548 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 1 413 IPR044519 GO:0005096|GO:0016192
Amo05g2286 548 MobiDBLite consensus disorder prediction 483 500 - -
Amo05g2286 548 Pfam Putative GTPase activating protein for Arf 5 101 IPR001164 GO:0005096
Amo05g2286 548 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 474 548 - -
Amo05g2286 548 Gene3D Arf GTPase activating protein 1 129 IPR038508 -
Amo05g2286 548 MobiDBLite consensus disorder prediction 193 208 - -
Amo05g2286 548 PRINTS HIV Rev interacting protein signature 56 77 IPR001164 GO:0005096
Amo05g2286 548 PRINTS HIV Rev interacting protein signature 35 52 IPR001164 GO:0005096
Amo05g2286 548 PRINTS HIV Rev interacting protein signature 16 35 IPR001164 GO:0005096
Amo05g2286 548 ProSiteProfiles ARF GTPase-activating proteins domain profile. 4 120 IPR001164 GO:0005096
Amo05g2286 548 MobiDBLite consensus disorder prediction 341 548 - -
Amo05g2286 548 MobiDBLite consensus disorder prediction 158 172 - -
Amo05g2286 548 MobiDBLite consensus disorder prediction 118 253 - -
Amo05g2286 548 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD6-RELATED 474 548 IPR044519 GO:0005096|GO:0016192
Amo05g2286 548 SMART arf_gap_3 4 120 IPR001164 GO:0005096
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2286 Amo-Chr5 48734175 48736737 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2286 5 138 C2H2 Transcription Factor Family AT4G21160 38.971 7.27e-22 95.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2286 K12492 - gmx:100801306 690.649