Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2280 ATGATGAGGCCGAAGACATATGCGGGTCTCAGTTTGATTGCAACTCTAGCTATCACATATCATGCATTTAACAGTAGAGGCCAGTTTTATCCGGCAATGGTGTATCTTTCAACTTCCAAGATTAGTTTAGTGCTTCTTCTCAACATGGGTTTGGTCATTATGTGTATTTTATGGCAGTTAACGAAGAAGGTTTTCCTGGGTTCTCCTCGGGAAGCCAAGGTAGAAAGGCTTAACGAGCGATCATGGAGGGAGATTATGGAAATCCTCTTTGCCATTACTATTTTTAGGCAGGATTTCTCTGTTACATTCCTTGCCATGGCCACAGCATTGCTGTTGATTCAAGCTTTGCATTGGTTGGCTCAAAAGAGGGTTGAGTACATTGAGACCACTCCTGTGCGGCTGTGTCCGTGTTATTCCACATTCGTACATGATACTTGCAACTATAACTGTGTCAGTTTTTGTAAAATATCTTTTCTATATCAGTACCATGCTCATGGAAGGACAATGGGAAAGGAAACCAATCTTCACATTCTACTTGGAACTTATCAGGGACTTGCTTCACTTGTCTACGTATCTTTTCTTCTTCCTTGTAATTTTTATGTAAGTGTTCAGCCTACTATTTACATATATATGGTTTTCTTCAGAAACTACGGTGTTCCTCTGCACTTAATACGGGTGCTTTACGAGACATTTAGGAACTTCAAAGTCCGTGTTGKAGATTACATCCGATATTGTAAGATCACTTCAAATATGAAGGACCGTTTTCCAGAGGCAACCCCTGAAGAGCATAATGCAAGTGATGCAKCCTGCATTATCTGTCGTGAAGAGATGACTYRTGCCAAGAAACTTATATGTGGACATCTGTTTCATGTTCATTGCCTCCGATCATGGCTGGAGCGGCAACATACTTGCRCTACCTGCAGAGCCCTGGTTGTTCCACCCGAAAATGGGGCAACTGCAACTGGAGGCCAGCAAGGAGCACAATCAGATGCTCATCGACAGGCTCAAAATGAGGTTGGCGGTGGTGGGGCAARTGATAATTTGAGTCGCCATCAAGCCAGACMTCAAGCTGCTGCTGCTGCTGTTTCAATATACGAGAATTCTTATGTTTACCCCTCCACATCATCTTTAGTATGCTCTCCTGGGTACGCTCTTCTACCTCTAGTTCAAATGTCTTTGGGTGAATCCATTAACACGGGGCTTAACGAAGAACAAGCTTCCAGTGAACAGGCACAAAAGCCGCTTGTTTTCCCTGGTGGACCAATTGTATCCTTTCCTCAAATGGGGCACTTCCATTTGTTTCCTTCCCAAACACATCCAGTTCCTGCAAATCATGGAATGGAGTTTGGAGTTTATCCGAATATGCCAAGTTCGCACCTGGAAGCTCAAAGAAAACTTCTTCAGTACCAGATTGAGATTCTACAAAATCAGCTCCAGCTTTTTGCAGAGGACAAAAGGTTGAAAATAGTGTAG 1473 0.4291 MMRPKTYAGLSLIATLAITYHAFNSRGQFYPAMVYLSTSKISLVLLLNMGLVIMCILWQLTKKVFLGSPREAKVERLNERSWREIMEILFAITIFRQDFSVTFLAMATALLLIQALHWLAQKRVEYIETTPVRLCPCYSTFVHDTCNYNCVSFCKISFLYQYHAHGRTMGKETNLHILLGTYQGLASLVYVSFLLPCNFYVSVQPTIYIYMVFFRNYGVPLHLIRVLYETFRNFKVRVXDYIRYCKITSNMKDRFPEATPEEHNASDAXCIICREEMTXAKKLICGHLFHVHCLRSWLERQHTCXTCRALVVPPENGATATGGQQGAQSDAHRQAQNEVGGGGAXDNLSRHQARXQAAAAAVSIYENSYVYPSTSSLVCSPGYALLPLVQMSLGESINTGLNEEQASSEQAQKPLVFPGGPIVSFPQMGHFHLFPSQTHPVPANHGMEFGVYPNMPSSHLEAQRKLLQYQIEILQNQLQLFAEDKRLKIV* 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2280 490 ProSiteProfiles Zinc finger RING-type profile. 270 308 IPR001841 -
Amo05g2280 490 Coils Coil 457 477 - -
Amo05g2280 490 SUPERFAMILY RING/U-box 250 314 - -
Amo05g2280 490 PANTHER RING ZINC FINGER PROTEIN 209 421 - -
Amo05g2280 490 PANTHER RING ZINC FINGER PROTEIN 1 132 - -
Amo05g2280 490 PANTHER - 209 421 - -
Amo05g2280 490 PANTHER - 1 132 - -
Amo05g2280 490 MobiDBLite consensus disorder prediction 318 335 - -
Amo05g2280 490 Pfam Ring finger domain 269 308 IPR001841 -
Amo05g2280 490 MobiDBLite consensus disorder prediction 318 349 - -
Amo05g2280 490 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 242 315 IPR013083 -
Amo05g2280 490 CDD RING-H2_synoviolin 267 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2280 Amo-Chr5 48589079 48592430 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2280 1 485 C3H Transcription Factor Family AT3G16090 48.282 5.62e-150 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2280 K10601 - gmx:100816441 590.882
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2280 05 48589079 48592430 Amo15g0048 15 1904105 1907441 hybridization