Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2278 ATGGATCCTTACGATGATATTCTCCCAACGGCTCCTGCTGGGCGCGGTCGTGCTGGGGCAAAGTTTGCCCCGAAGGTCAAACCGAAACCGGTGCCTCGGAAGGAAATTTCTGCTGAAAAACATGAAATCTCGTCTAAAGATGGAGAGGGAGAACGTGTTGCTTCATCCATCATCACCAGCAGTAAGGACATAGATACTGTTCCCCAGAGTAAATGCCATGCTGCTGTTGCTTCCACTTTGAGTGTGCGACCTCAACATTCTGCAGGTTCAAATTTAGAGGATGCCACAAAATCTCAAATGGCAAATCCTCAGCAAGTTGGTGTAAATGTGGATACTGCAGCCTTAGTGGATGCTCAACCTTCCACAGCTGCATCGACTGAAGTTGAGTCAGCTCGTGAGGAAGATCCTGTAGCTTTGGAAGGGAGCCGACATTCTAATTTTGTTCCTGAGACCAATCTCAGTAATGACTCAACACATCCAGTTCAAACTGCTGATTCTGTAGAGAAGCTATCAAATAATGTAGCTATTCTATCTACAATATGCTCAACCGGAGGTAGTATGGGAGATCCCGCTCAAAATGAAAAAGAGCCAGTTCTTGATAGCAACGACTGCTTGGGACTTAGTGATGATTTGATGCAAGTTGGCCCGGATGTGGGCTTTGAAAATGCTTCAGATAATGATGCTGCAATACTTGAGAGCAACATTCAATCGAACCTTATCTTTGGAAGAGAACGAGAGGCAGAGTCTGAGAAATTTGAATTGGATCCTTTTAGTGAAGTCCTCCCTGATCCTGGCACTAGGACTGCTCGTAAGTTTCAACCCAAGATTAAGCCACGACCTAGAGTAGGCGCAAAACCTGCTGTTGCTTCTGCTTCATCTAATGATATGATGGCAAGGTCTGTTGAGTTGCCTACATTTTGCATGAATGAAGTTCAATCTTTTCAGTCTAGTGATGATGGCATTAGTATGTTAAATCAACCAAGCAATTCACCTGTACCCACATTAGAGATTCCTATGGCAACTGATTTATCAAGTAAGTTTGATTATGTGGACTCAAGTATTCCATTCTCTAAAGACAACAATAATTTGGCAGCAGTCAGTGCTTCCCAACTGGATTCTCTCGATGCTGTGTTTTCTGATGTTGCAGTTCATAATGGAACTAGGGATTTGCCTTCTAGTGTTGGTAAATCAGCTGCAGAGAGTGCAGACATTTTTGCTGGGTTGGAATCCATTGATGACTTTACCACCCAAGCTGCCACTACTACAGGAAAACCAATTCTTCAATCGGAAACAGAGGAAGCTGTGAACTTGAGTCCTGGCTGCCCAGTTGATAATGTCTCAGATTATCAGTCCAAGAAAACTGACAAAGATCCAGCTTCTGAAATCCCGGTGGATGAAGAACTGACAAATTCTCCAAATAGTCCCACATTGGCTGATCTTATGCAGGATGCTAATGGAAGAAAAAAGGAAGACGCAGTGTGGAGTTCTCTTAGGAAGCGCAAAAAATCTGGTGCTAATGAGGAGGATAAAGGTGTTAAAACTTCAAGGCAGCGGAGGAAGCAAGCAACTCATAAACCTGTTAGCAACTCGGTGAATGAGGATGATGATGATGATGACGACCTTGACCCTCCCTATAATCCGTATAGAGATGAACCTGAAGAGAATGATGAAGAATTTGAAGTGGATGACTCCTCCAAGAAGAAGGCATCATTGAATTCAACAAAGAAATCAGTGGCTAAAAATGGAAAAACATCTCAAAAACATAAGAAGGCTAATGAYGATTTAGAAAATGGCAAAAAAGAACCTCCTAAAAYGTTCTCTCATTCAAGCAGACYAAAAAGAAGATGTGTGAACCAAGCACTGCTGGAAATTCCTGAGGATGAACTTGATATGCATACATTGTCTCTCAAGGATATCATTTTACTTGCAGAACACAGGGAGCGGCTGGCAAAAAAGGAGGCAGCAACTTCAAAGACATCTACCAATCAAAGTGGTGGAGATTCCCAACATGAGGCCGAGGCTGGAGCTAATAGTGAAGAGGAGTATTTAGGTTCAGAAGATGATAGAGAAGCAGGTGACGATGAAGCCAGTGAGAGTGTTCCGTTGGCTTCCTCTTTATTCAACTACCAATCCTTCATGGAAAAGACTCCTAGGGGAAAATGGACAAAACATGATAATGAACTGTTCTATGAGGCAGTTAGGCAGTTTGGCACAGATTTTTCTATGATACAACAGCTTTTTCCTGATCGAACACGTCACCAAATTAAGTTGAAGTACAAGAAGGAAGAGCGACAGCATCCTCTACGGTTAGCTGATGCTGTAAATAATCGTTCAAAAGATAATTTTCATTTTAAGATGTTGATTGAGAGACTGCAGCAAGCTTCAGCCAAGGAAGATCAAGACCGTGGTAAAGATGCATCAGGTTCGATGGCAGCAGAGGAGGTTGAGAATTCGGCACCTGGAACTAATGAGGATGTTGGAACAACTGAACAGGAGGAGTTTGCAACAACTGAGCAGGAGGCAAATGTCGAAGATCAACAAGATTCTAAGTCAGTTCCTAGTCCAGAACAATTTGACAATAGTGATGATGAATTAGCAATATGGGCTCAATATAAAAGTGAAATTTAG 2628 0.4254 MDPYDDILPTAPAGRGRAGAKFAPKVKPKPVPRKEISAEKHEISSKDGEGERVASSIITSSKDIDTVPQSKCHAAVASTLSVRPQHSAGSNLEDATKSQMANPQQVGVNVDTAALVDAQPSTAASTEVESAREEDPVALEGSRHSNFVPETNLSNDSTHPVQTADSVEKLSNNVAILSTICSTGGSMGDPAQNEKEPVLDSNDCLGLSDDLMQVGPDVGFENASDNDAAILESNIQSNLIFGREREAESEKFELDPFSEVLPDPGTRTARKFQPKIKPRPRVGAKPAVASASSNDMMARSVELPTFCMNEVQSFQSSDDGISMLNQPSNSPVPTLEIPMATDLSSKFDYVDSSIPFSKDNNNLAAVSASQLDSLDAVFSDVAVHNGTRDLPSSVGKSAAESADIFAGLESIDDFTTQAATTTGKPILQSETEEAVNLSPGCPVDNVSDYQSKKTDKDPASEIPVDEELTNSPNSPTLADLMQDANGRKKEDAVWSSLRKRKKSGANEEDKGVKTSRQRRKQATHKPVSNSVNEDDDDDDDLDPPYNPYRDEPEENDEEFEVDDSSKKKASLNSTKKSVAKNGKTSQKHKKANDDLENGKKEPPKXFSHSSRXKRRCVNQALLEIPEDELDMHTLSLKDIILLAEHRERLAKKEAATSKTSTNQSGGDSQHEAEAGANSEEEYLGSEDDREAGDDEASESVPLASSLFNYQSFMEKTPRGKWTKHDNELFYEAVRQFGTDFSMIQQLFPDRTRHQIKLKYKKEERQHPLRLADAVNNRSKDNFHFKMLIERLQQASAKEDQDRGKDASGSMAAEEVENSAPGTNEDVGTTEQEEFATTEQEANVEDQQDSKSVPSPEQFDNSDDELAIWAQYKSEI* 876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2278 875 MobiDBLite consensus disorder prediction 28 49 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 821 858 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 82 127 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 466 480 - -
Amo05g2278 875 PANTHER TRANSCRIPTION FACTOR TFIIIB COMPONENT B'' HOMOLOG 267 854 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 436 619 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 586 608 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 651 700 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 793 875 - -
Amo05g2278 875 ProSiteProfiles Myb-like domain profile. 713 763 IPR001005 -
Amo05g2278 875 SMART sant 717 765 IPR001005 -
Amo05g2278 875 MobiDBLite consensus disorder prediction 483 516 - -
Amo05g2278 875 Gene3D - 721 799 - -
Amo05g2278 875 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 713 761 IPR017930 -
Amo05g2278 875 MobiDBLite consensus disorder prediction 1 61 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 680 694 - -
Amo05g2278 875 Pfam Myb DNA-binding like 711 794 IPR039467 -
Amo05g2278 875 MobiDBLite consensus disorder prediction 82 163 - -
Amo05g2278 875 PANTHER RNA POLYMERASE III TRANSCRIPTION INITIATION FACTOR B 267 854 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 655 671 - -
Amo05g2278 875 CDD SANT 720 761 IPR001005 -
Amo05g2278 875 SUPERFAMILY Homeodomain-like 719 767 IPR009057 -
Amo05g2278 875 MobiDBLite consensus disorder prediction 449 463 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 145 163 - -
Amo05g2278 875 MobiDBLite consensus disorder prediction 793 809 - -
Amo05g2278 875 ProSiteProfiles SANT domain profile. 720 764 IPR017884 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Amo05g2278 Myb_DNA-bind_7 8.1e-27 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2278 K15198 - gmx:100792788 727.243