Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Amo05g2277 ATGTTGTCAGTAGCTCCTTCTCTTGACAGCACCCAAACCCAACAACAACAGCAGCAGCAAAGGACCGCTGACCCAACCCAACAACCCAATTCTTCTCCCCAAAATGTCCACATCTTCAAGTCTAAATTACCCGATATACCCCTCTCTAACCACCTTCCTCTCCACTCTTTCTGCTTCCAAAGACTCAATGAAATCTCTGACCGTCCATGTCTCATCGTCGGTTCCGCCGGAAAAATCTACACCTACGGCGAAACATACCACGCCTCCCGGAGACTCGCCGCCGGCATGTCCGCCATCGGAATTACCAAGGGCGATGTCATCATGATCCTCCTCCAGAACTCAGCGGAGTTTGTCTTCTCCTTCATCGCCGCCTCCATGATCGGCGCTGTCGCCACCACCGCCAACCCGTTCTACACTCCCGCCGAGATCTTCAAGCAGATCACCGCCTCCAAGGCCAAGCTCGTCATCACGCAGGCAATGTACGTTGACAAGCTCCGAGACAGCGATTCCGCCAAAATCGGAGAGGATTTCAAGGTCGTAACCGTCGACGATCCGCCGGAGAACTGCCTGCACTTCTCAGCGATCTCCGAGGGAAACGAGAACGACCTACCGGAGGTTGAGATCCACCCTGACGACGCGGTGGCGCTGCCGTTCTCCTCCGGAACAACCGGTCTCCCGAAAGGAGTGGTTCTCACGCARAGGAGCTTAACGACGAGCGTGGCTCAACAGGTCGACGGAGAAAACCCTAACCTGTACCTGAAAACGGAGGACGTTCTTCTCTGCGTTCTTCCTCTGTTCCACATATTCTCGCTGAACAGTGTTCTGTTGTGTGCTTTGAGAGCTGGAAGCGCCGTGTTGCTGATGCAGAAGTTCGACATTGGAACGTTGCTGGAGCTCATTCAGAGGTACAGGGTTTCGGTGGCGATGGTGGTGCCACCGCTCGTGCTGGCTCTGGCGAAGAATCCGATGGTGGTGGAGTATGATTTGAGCTCTATAAGGTTGGTGTTGTCCGGAGCGGCGCCGCTCGGCAAGGAGCTCGAAGAGGGTCTCCGGAGCAGGGTGCCTCAAGCTGTTTTGGGACAGGGGTACGGGATGACAGAGGCAGGGCCAGTGCTGTCCATGTGCTTGGGCTTTGCGAAGCAACCATTCCCAACGAAATCAGGTTCATGTGGCACTGTTGTTAGAAATGCTGAGCTTAAGGTCGTCGACCCTGAAACTGGTTGCTCTCTTGGTTATAATCAACCTGGTGAAATTTGCATCCGTGGTCAACAAATCATGAAAGGGTATTTGAACGATGATACAGCAACAGCAACAACTATCGATGTGGATGGCTGGCTGCATACCGGTGATGTTGGTTATGTAGATGATGATGATGAAATCTTCATCGTTGACAGGGTCAAGGAACTCATCAAATTTAAAGGTTTCCAGGTGCCCCCTGCAGAACTTGAAGCCCTTCTTGTAAGRCACCCCTCTATTGCAGACGCAGCTGTTGTCCCGCAAAAGGATGTTGCTGCTGGTGAAGTTCCTGTTGCATTCGTGGTTAGATCTAATGGCTTTGAACTCACTGAAGAGTCTGTAAAGGAATTCATAGCTAAACAGGTAGTGTTTTACAAAAGACTACACAAAGTGTACTTTGTGCATGCAATTCCGAAGTCTCCATCAGGAAAGATATTAAGGAAAGACCTCAGAGCAAAGCTAGAAAACACCACCACCCTTAAGCCCTAG 1725 0.5159 MLSVAPSLDSTQTQQQQQQQRTADPTQQPNSSPQNVHIFKSKLPDIPLSNHLPLHSFCFQRLNEISDRPCLIVGSAGKIYTYGETYHASRRLAAGMSAIGITKGDVIMILLQNSAEFVFSFIAASMIGAVATTANPFYTPAEIFKQITASKAKLVITQAMYVDKLRDSDSAKIGEDFKVVTVDDPPENCLHFSAISEGNENDLPEVEIHPDDAVALPFSSGTTGLPKGVVLTQRSLTTSVAQQVDGENPNLYLKTEDVLLCVLPLFHIFSLNSVLLCALRAGSAVLLMQKFDIGTLLELIQRYRVSVAMVVPPLVLALAKNPMVVEYDLSSIRLVLSGAAPLGKELEEGLRSRVPQAVLGQGYGMTEAGPVLSMCLGFAKQPFPTKSGSCGTVVRNAELKVVDPETGCSLGYNQPGEICIRGQQIMKGYLNDDTATATTIDVDGWLHTGDVGYVDDDDEIFIVDRVKELIKFKGFQVPPAELEALLVRHPSIADAAVVPQKDVAAGEVPVAFVVRSNGFELTEESVKEFIAKQVVFYKRLHKVYFVHAIPKSPSGKILRKDLRAKLENTTTLKP* 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Amo05g2277 574 Pfam AMP-binding enzyme 65 472 IPR000873 -
Amo05g2277 574 Gene3D - 467 571 IPR045851 -
Amo05g2277 574 ProSitePatterns Putative AMP-binding domain signature. 216 227 IPR020845 -
Amo05g2277 574 MobiDBLite consensus disorder prediction 1 36 - -
Amo05g2277 574 Pfam AMP-binding enzyme C-terminal domain 481 556 IPR025110 -
Amo05g2277 574 SUPERFAMILY Acetyl-CoA synthetase-like 29 568 - -
Amo05g2277 574 CDD 4CL 48 562 - -
Amo05g2277 574 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 37 565 - -
Amo05g2277 574 PANTHER 4-COUMARATE--COA LIGASE 3 37 565 - -
Amo05g2277 574 Gene3D - 30 466 IPR042099 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Amo05g2277 Amo-Chr5 48558961 48564241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Amo05g2277 32 479 Monolignol Biosynthesis Gene Families AT1G65060 71.175 0.0 662
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Amo05g2277 K01904 - gmx:547930 930.628
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Amo05g2277 05 48558961 48564241 Amo15g0051 15 1937551 1942731 hybridization